Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371289 Gene

Subcategory (RNA class) for LOC105371289 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371289 Gene

  • Uncharacterized LOC105371289 3

External Ids for LOC105371289 Gene

Previous GeneCards Identifiers for LOC105371289 Gene

  • GC16U901945

Summaries for LOC105371289 Gene

GeneCards Summary for LOC105371289 Gene

LOC105371289 (Uncharacterized LOC105371289) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371289 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371289 Gene

Genomics for LOC105371289 Gene

GeneHancer (GH) Regulatory Elements for LOC105371289 Gene

Promoters and enhancers for LOC105371289 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J057132 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +1.1 1126 4.6 PRDM1 IKZF1 ZNF512 PKNOX1 SOX13 NR2F1 NONO ZNF366 EBF1 PLRG1 LOC105371289 FAM192A NUDT21 RSPRY1 CPNE2 POLR2C PLLP GC16P057096
GH16J057136 Enhancer 0.2 dbSUPER 600.7 -1.9 -1853 0.6 LOC105371289 FAM192A RSPRY1 PLLP ENSG00000279803 CPNE2
GH16J057139 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 -4.8 -4756 0.4 NR2F2 FAM192A RSPRY1 ENSG00000279803 LOC105371289 CPNE2
GH16J057115 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +19.6 19644 1.6 RFX1 ZNF24 SCRT2 ZBTB44 NR2F2 ZNF16 EBF1 BHLHE40 GLIS1 ZBTB33 RSPRY1 CPNE2 FAM192A LOC105371289 GC16P057096
GH16J057127 Enhancer 0.8 ENCODE dbSUPER 0.4 +7.9 7850 1.1 MLLT1 EGR1 IKZF1 IKZF2 PKNOX1 RUNX3 NR2F1 SMARCA5 BATF EBF1 CPNE2 LOC105371289 GC16P057096
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371289 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371289 Gene

Genomic Locations for LOC105371289 Gene
chr16:57,133,495-57,135,445
(GRCh38/hg38)
Size:
1,951 bases
Orientation:
Minus strand

Genomic View for LOC105371289 Gene

Genes around LOC105371289 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371289 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371289 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371289 Gene

Proteins for LOC105371289 Gene

Post-translational modifications for LOC105371289 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371289 Gene

Domains & Families for LOC105371289 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371289 Gene

Function for LOC105371289 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371289 Gene

Localization for LOC105371289 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371289 Gene

Pathways & Interactions for LOC105371289 Gene

PathCards logo

SuperPathways for LOC105371289 Gene

No Data Available

Interacting Proteins for LOC105371289 Gene

Gene Ontology (GO) - Biological Process for LOC105371289 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371289 Gene

Drugs & Compounds for LOC105371289 Gene

No Compound Related Data Available

Transcripts for LOC105371289 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371289 Gene

No ASD Table

Relevant External Links for LOC105371289 Gene

GeneLoc Exon Structure for
LOC105371289

No data available for mRNA/cDNA for LOC105371289 Gene

Expression for LOC105371289 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371289 Gene

Orthologs for LOC105371289 Gene

No data available for Orthologs and Evolution for LOC105371289 Gene

Paralogs for LOC105371289 Gene

No data available for Paralogs for LOC105371289 Gene

Variants for LOC105371289 Gene

Sequence variations from dbSNP and Humsavar for LOC105371289 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000045987 -- 57,137,061(-) C/G upstream_transcript_variant
rs1001460059 -- 57,135,327(-) C/T non_coding_transcript_variant
rs1003453795 -- 57,133,356(-) G/T downstream_transcript_variant
rs1004173965 -- 57,135,956(-) G/A upstream_transcript_variant
rs1004525879 -- 57,136,337(-) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371289 Gene

Disorders for LOC105371289 Gene

No disorders were found for LOC105371289 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371289 Gene

Publications for LOC105371289 Gene

No publications were found for LOC105371289 Gene.

No data available for External Links for LOC105371289 Gene

Products for LOC105371289 Gene

Sources for LOC105371289 Gene

Content
Loading form....