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Aliases for LOC105371240 Gene

Subcategory (RNA class) for LOC105371240 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371240 Gene

  • Uncharacterized LOC105371240 3

External Ids for LOC105371240 Gene

Previous GeneCards Identifiers for LOC105371240 Gene

  • GC16U901876

Summaries for LOC105371240 Gene

GeneCards Summary for LOC105371240 Gene

LOC105371240 (Uncharacterized LOC105371240) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371240 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371240 Gene

Genomics for LOC105371240 Gene

GeneHancer (GH) Regulatory Elements for LOC105371240 Gene

Promoters and enhancers for LOC105371240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J048622 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.1 81 2.2 CC2D1A CTCF ELF3 ZKSCAN8 NKRF CEBPG AHR MAFK ELF1 SP7 LOC105371240 ENSG00000260086 N4BP1 SIAH1 ENSG00000260052
GH16J048621 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.8 -1784 0.7 CTBP1 FOXA2 TCF12 CBFA2T3 N4BP1 LOC105371240 ENSG00000260086 ENSG00000259912 SIAH1
GH16J048630 Enhancer 0.8 ENCODE 0.4 +7.1 7137 0.2 CC2D1A ELF3 CTCF MLLT1 ZSCAN21 SP7 RAD21 IKZF1 IKZF2 GATAD2A LONP2 ABCC11 ENSG00000260052 ENSG00000261267 LOC105371240 ENSG00000260086
GH16J048632 Enhancer 0.8 ENCODE 0.4 +9.1 9067 0.2 CEBPG SP1 HNF1A ZNF384 ZNF644 KAT8 HMG20B RCOR2 IRF2 KMT2B ENSG00000260052 ENSG00000260086 LOC105371240
GH16J048687 Enhancer 0.6 Ensembl 0.2 +64.2 64163 0.4 ELF3 CTCF SP5 RAD21 ZNF143 REST TRIM22 KLF9 SMC3 GATAD1 KLF8P1 ENSG00000272545 LOC105371240 ENSG00000260086
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371240 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371240 Gene

Genomic Locations for LOC105371240 Gene
chr16:48,623,438-48,748,924
(GRCh38/hg38)
Size:
125,487 bases
Orientation:
Plus strand

Genomic View for LOC105371240 Gene

Genes around LOC105371240 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371240 Gene

Proteins for LOC105371240 Gene

Post-translational modifications for LOC105371240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371240 Gene

Domains & Families for LOC105371240 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371240 Gene

Function for LOC105371240 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371240 Gene

Localization for LOC105371240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371240 Gene

Pathways & Interactions for LOC105371240 Gene

PathCards logo

SuperPathways for LOC105371240 Gene

No Data Available

Interacting Proteins for LOC105371240 Gene

Gene Ontology (GO) - Biological Process for LOC105371240 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371240 Gene

Drugs & Compounds for LOC105371240 Gene

No Compound Related Data Available

Transcripts for LOC105371240 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371240 Gene

No ASD Table

Relevant External Links for LOC105371240 Gene

GeneLoc Exon Structure for
LOC105371240

No data available for mRNA/cDNA for LOC105371240 Gene

Expression for LOC105371240 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371240 Gene

Orthologs for LOC105371240 Gene

No data available for Orthologs and Evolution for LOC105371240 Gene

Paralogs for LOC105371240 Gene

No data available for Paralogs for LOC105371240 Gene

Variants for LOC105371240 Gene

Sequence variations from dbSNP and Humsavar for LOC105371240 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000000902 -- 48,703,015(+) AA/A intron_variant
rs1000022005 -- 48,693,224(+) T/C intron_variant
rs1000024825 -- 48,733,531(+) C/G/T intron_variant
rs1000036651 -- 48,641,714(+) C/G intron_variant
rs1000042252 -- 48,636,473(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371240 Gene

Disorders for LOC105371240 Gene

No disorders were found for LOC105371240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371240 Gene

Publications for LOC105371240 Gene

No publications were found for LOC105371240 Gene.

No data available for External Links for LOC105371240 Gene

Products for LOC105371240 Gene

Sources for LOC105371240 Gene

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