Aliases for LOC105371184 Gene

Aliases for LOC105371184 Gene

  • Uncharacterized LOC105371184 3
  • Uncharacterized Protein LOC440330 3
  • LA16c-313D11.9 3

External Ids for LOC105371184 Gene

Previous GeneCards Identifiers for LOC105371184 Gene

  • GC16U902239

Summaries for LOC105371184 Gene

GeneCards Summary for LOC105371184 Gene

LOC105371184 (Uncharacterized LOC105371184) is a Pseudogene. Diseases associated with LOC105371184 include Spinocerebellar Ataxia, Autosomal Recessive 16.

Additional gene information for LOC105371184 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371184 Gene

Genomics for LOC105371184 Gene

GeneHancer (GH) Regulatory Elements for LOC105371184 Gene

Promoters and enhancers for LOC105371184 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J000676 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +1.0 1026 5.8 ZNF785 SP1 ZBTB40 ZBTB6 POLR2A MYC L3MBTL2 MAX DACH1 MNT ENSG00000260394 ENSG00000279441 LOC105371184 STUB1 WDR90 CRAMP1 ENSG00000260051 WDR24 WFIKKN1 WASH4P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371184 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371184 Gene

Genomic Locations for LOC105371184 Gene
chr16:678,507-680,527
(GRCh38/hg38)
Size:
2,021 bases
Orientation:
Minus strand

Genomic View for LOC105371184 Gene

Genes around LOC105371184 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371184 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371184 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371184 Gene

Proteins for LOC105371184 Gene

Post-translational modifications for LOC105371184 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371184 Gene

Domains & Families for LOC105371184 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371184 Gene

Function for LOC105371184 Gene

Phenotypes From GWAS Catalog for LOC105371184 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371184 Gene

Localization for LOC105371184 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371184 Gene

Pathways & Interactions for LOC105371184 Gene

PathCards logo

SuperPathways for LOC105371184 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371184 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371184 Gene

Drugs & Compounds for LOC105371184 Gene

No Compound Related Data Available

Transcripts for LOC105371184 Gene

mRNA/cDNA for LOC105371184 Gene

(3) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371184 Gene

No ASD Table

Relevant External Links for LOC105371184 Gene

GeneLoc Exon Structure for
LOC105371184

Expression for LOC105371184 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371184 Gene

Orthologs for LOC105371184 Gene

No data available for Orthologs and Evolution for LOC105371184 Gene

Paralogs for LOC105371184 Gene

No data available for Paralogs for LOC105371184 Gene

Variants for LOC105371184 Gene

Sequence variations from dbSNP and Humsavar for LOC105371184 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs587777340 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,572(-) C/T upstream_transcript_variant
rs587777341 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,468(-) A/T upstream_transcript_variant
rs587777342 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,520(-) G/A/T upstream_transcript_variant
rs587777344 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,446(-) C/G/T upstream_transcript_variant
rs587777346 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,227(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371184 Gene

Disorders for LOC105371184 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371184 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spinocerebellar ataxia, autosomal recessive 16
  • scar16
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371184: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371184 Gene

Publications for LOC105371184 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC105371184 Gene

Products for LOC105371184 Gene

Sources for LOC105371184 Gene