Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371184 Gene

Subcategory (RNA class) for LOC105371184 Gene

lncRNA

Aliases for LOC105371184 Gene

  • Uncharacterized LOC105371184 3
  • Uncharacterized Protein LOC440330 3
  • LA16c-313D11.9 3
  • Z92544.1 5

External Ids for LOC105371184 Gene

ORGUL Members for LOC105371184 Gene

Previous GeneCards Identifiers for LOC105371184 Gene

  • GC16U902239

Summaries for LOC105371184 Gene

GeneCards Summary for LOC105371184 Gene

LOC105371184 (Uncharacterized LOC105371184) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC105371184 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371184 Gene

Genomics for LOC105371184 Gene

GeneHancer (GH) Regulatory Elements for LOC105371184 Gene

Promoters and enhancers for LOC105371184 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I000678 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 570 +0.1 117 3.7 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B ZNF213 ZNF207 LOC105371184 STUB1 PIR59271 ENSG00000279441 WDR90 ENSG00000260051 ENSG00000260646 WDR24 ENSG00000228779 WASH4P
GH16I001271 Enhancer 1.1 ENCODE 101.6 -591.3 -591299 1.6 PKNOX1 SMAD1 SIN3A FEZF1 ZNF2 ZNF213 ZNF302 ZNF416 KLF13 SP3 CRAMP1 WDR90 IFT140 TELO2 ENSG00000260646 TSC2 ENSG00000261505 E4F1 WDR24 ENSG00000260051
GH16I001308 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 43.4 -630.2 -630227 5.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 UBE2I LOC102723815 WDR90 CRAMP1 TELO2 ENSG00000261505 E4F1 TSC2 ENSG00000260051 IFT140
GH16I000396 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.1 +280.6 280644 7.7 HDGF ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 NME4 DECR2 WDR90 ENSG00000261505 RHOT2 WASH4P JMJD8 CAPN15 UBE2I AXIN1
GH16I000640 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 13 +35.0 34972 10.1 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 WDR90 GC16P000998 MCRIP2 IFT140 LUC7L ENSG00000262528 WFIKKN1 CRAMP1 UBE2I RHBDL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105371184 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371184 Gene

Genomic Locations for LOC105371184 Gene
chr16:678,504-680,527
(GRCh38/hg38)
Size:
2,024 bases
Orientation:
Minus strand
chr16:728,504-729,777
(GRCh37/hg19)

Genomic View for LOC105371184 Gene

Genes around LOC105371184 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371184 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371184 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371184 Gene

Proteins for LOC105371184 Gene

Post-translational modifications for LOC105371184 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371184 Gene

Domains & Families for LOC105371184 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371184 Gene

Function for LOC105371184 Gene

Phenotypes From GWAS Catalog for LOC105371184 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371184 Gene

Localization for LOC105371184 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371184 Gene

Pathways & Interactions for LOC105371184 Gene

SuperPathways for LOC105371184 Gene

No Data Available

Interacting Proteins for LOC105371184 Gene

Gene Ontology (GO) - Biological Process for LOC105371184 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371184 Gene

Drugs & Compounds for LOC105371184 Gene

No Compound Related Data Available

Transcripts for LOC105371184 Gene

mRNA/cDNA for LOC105371184 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371184 Gene

No ASD Table

Relevant External Links for LOC105371184 Gene

GeneLoc Exon Structure for
LOC105371184

Expression for LOC105371184 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371184 Gene

Orthologs for LOC105371184 Gene

Evolution for LOC105371184 Gene

ENSEMBL:
Gene Tree for LOC105371184 (if available)
TreeFam:
Gene Tree for LOC105371184 (if available)

No data available for Orthologs for LOC105371184 Gene

Paralogs for LOC105371184 Gene

No data available for Paralogs for LOC105371184 Gene

Variants for LOC105371184 Gene

Sequence variations from dbSNP and Humsavar for LOC105371184 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs587777340 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,572(-) C/T upstream_transcript_variant
rs587777341 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,468(-) A/T upstream_transcript_variant
rs587777342 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,520(-) G/A/T upstream_transcript_variant
rs587777344 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,446(-) C/G/T upstream_transcript_variant
rs587777346 pathogenic, Spinocerebellar ataxia, autosomal recessive 16 681,227(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371184 Gene

Disorders for LOC105371184 Gene

Additional Disease Information for LOC105371184

No disorders were found for LOC105371184 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371184 Gene

Publications for LOC105371184 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC105371184 Gene

Sources for LOC105371184 Gene

Content
Loading form....