Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371143 Gene

Subcategory (RNA class) for LOC105371143 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105371143 Gene

  • Uncharacterized LOC105371143 3
  • AC008938.1 5

External Ids for LOC105371143 Gene

Previous GeneCards Identifiers for LOC105371143 Gene

  • GC16U901934

Summaries for LOC105371143 Gene

GeneCards Summary for LOC105371143 Gene

LOC105371143 (Uncharacterized LOC105371143) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371143 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371143 Gene

Genomics for LOC105371143 Gene

GeneHancer (GH) Regulatory Elements for LOC105371143 Gene

Promoters and enhancers for LOC105371143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I024493 Enhancer 0.7 ENCODE 550.8 +1.1 1068 1.1 KLF1 JUN MAX CEBPG BRCA1 RFX5 FOS MAFK E2F6 TCF7L2 LOC105371143 ARHGAP17 ENSG00000260751 ENSG00000261723 RBBP6 DCTN5 GGA2 RNU7-24P
GH16I024499 Enhancer 0.6 ENCODE 0.8 -4.2 -4218 0.2 CTCF ZNF654 ZNF189 REST ZNF2 RAD21 ARID2 SMC3 ZNF143 LOC105371143 RBBP6
GH16I024497 Enhancer 0.5 ENCODE 0.8 -2.4 -2418 0.2 SMC3 CEBPB PRDM10 ZNF398 RAD21 LOC105371143 RBBP6
GH16I024516 Enhancer 1.1 Ensembl ENCODE 0.3 -22.1 -22099 0.6 FOXA2 ARID4B ZNF2 YY1 GTF3C2 ZNF121 ZNF143 ATF7 RUNX3 DEK LOC105371143 RBBP6
GH16I024525 Enhancer 1 Ensembl ENCODE 0.3 -31.1 -31054 1.8 ELF3 FOXA2 KLF17 BRCA1 RARA RFX5 GTF3C2 ZNF121 POLR3A RCOR1 UBFD1 RBBP6 LOC105371143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105371143 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371143 Gene

Genomic Locations for LOC105371143 Gene
chr16:24,465,527-24,495,177
(GRCh38/hg38)
Size:
29,651 bases
Orientation:
Minus strand
chr16:24,484,119-24,506,498
(GRCh37/hg19)

Genomic View for LOC105371143 Gene

Genes around LOC105371143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371143 Gene

Proteins for LOC105371143 Gene

Post-translational modifications for LOC105371143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371143 Gene

Domains & Families for LOC105371143 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371143 Gene

Function for LOC105371143 Gene

Phenotypes From GWAS Catalog for LOC105371143 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371143 Gene

Localization for LOC105371143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371143 Gene

Pathways & Interactions for LOC105371143 Gene

SuperPathways for LOC105371143 Gene

No Data Available

Interacting Proteins for LOC105371143 Gene

Gene Ontology (GO) - Biological Process for LOC105371143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371143 Gene

Drugs & Compounds for LOC105371143 Gene

No Compound Related Data Available

Transcripts for LOC105371143 Gene

mRNA/cDNA for LOC105371143 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371143 Gene

No ASD Table

Relevant External Links for LOC105371143 Gene

GeneLoc Exon Structure for
LOC105371143

Expression for LOC105371143 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371143 Gene

Orthologs for LOC105371143 Gene

Evolution for LOC105371143 Gene

ENSEMBL:
Gene Tree for LOC105371143 (if available)
TreeFam:
Gene Tree for LOC105371143 (if available)

No data available for Orthologs for LOC105371143 Gene

Paralogs for LOC105371143 Gene

No data available for Paralogs for LOC105371143 Gene

Variants for LOC105371143 Gene

Sequence variations from dbSNP and Humsavar for LOC105371143 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000195401 -- 24,472,500(-) G/A intron_variant
rs1000220663 -- 24,474,943(-) C/A intron_variant
rs1000247689 -- 24,472,129(-) C/A intron_variant
rs1000266276 -- 24,486,603(-) G/A intron_variant
rs1000305032 -- 24,492,338(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371143 Gene

Disorders for LOC105371143 Gene

No disorders were found for LOC105371143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371143 Gene

Publications for LOC105371143 Gene

No publications were found for LOC105371143 Gene.

Products for LOC105371143 Gene

Sources for LOC105371143 Gene

Content
Loading form....