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Aliases for LOC105371090 Gene

Subcategory (RNA class) for LOC105371090 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371090 Gene

  • Uncharacterized LOC105371090 3
  • CTD-2583P5.1 3

External Ids for LOC105371090 Gene

Previous GeneCards Identifiers for LOC105371090 Gene

  • GC16U901986

Summaries for LOC105371090 Gene

GeneCards Summary for LOC105371090 Gene

LOC105371090 (Uncharacterized LOC105371090) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371090 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371090 Gene

Genomics for LOC105371090 Gene

GeneHancer (GH) Regulatory Elements for LOC105371090 Gene

Promoters and enhancers for LOC105371090 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012750 Enhancer 1 Ensembl ENCODE 0.7 +4.4 4361 0.8 SP1 ZNF687 JUND RELA CREM ZBED1 IKZF1 IKZF2 TRIM22 DPF2 ENSG00000263307 ZC3H7A ENSG00000261560 CPPED1 COX6CP1 ENSG00000260378 LOC105371090 LOC105371089
GH16J012757 Enhancer 1.1 Ensembl ENCODE 0.4 +12.8 12761 2.4 ZSCAN21 BACH1 SP7 SP1 SMARCA4 CREB1 GMEB1 RXRA IKZF1 RFX1 ENSG00000261158 LOC105371089 CPPED1 LOC105371090 ENSG00000260378
GH16J012753 Enhancer 0.9 Ensembl 0.4 +8.2 8240 1.4 CEBPG RERE SP1 HNF1A PPARG SP5 ZNF644 IKZF1 KAT8 RXRA ENSG00000261158 ENSG00000260378 LOC105371089 LOC105371090 CPPED1
GH16J012751 Enhancer 0.6 Ensembl 0.4 +6.3 6261 1 PKNOX1 TCF7L2 EP300 ZXDB ZNF766 OSR2 RCOR1 FEZF1 ZNF843 PRDM6 CPPED1 ENSG00000260378 LOC105371089 LOC105371090
GH16J012740 Enhancer 0.3 Ensembl 0.7 -4.8 -4839 0.4 SIN3B ENSG00000261158 LOC105371090 MIR4718 CPPED1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371090 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371090 Gene

Genomic Locations for LOC105371090 Gene
chr16:12,745,840-12,759,157
(GRCh38/hg38)
Size:
13,318 bases
Orientation:
Plus strand

Genomic View for LOC105371090 Gene

Genes around LOC105371090 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371090 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371090 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371090 Gene

Proteins for LOC105371090 Gene

Post-translational modifications for LOC105371090 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371090 Gene

Domains & Families for LOC105371090 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371090 Gene

Function for LOC105371090 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371090 Gene

Localization for LOC105371090 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371090 Gene

Pathways & Interactions for LOC105371090 Gene

PathCards logo

SuperPathways for LOC105371090 Gene

No Data Available

Interacting Proteins for LOC105371090 Gene

Gene Ontology (GO) - Biological Process for LOC105371090 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371090 Gene

Drugs & Compounds for LOC105371090 Gene

No Compound Related Data Available

Transcripts for LOC105371090 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371090 Gene

No ASD Table

Relevant External Links for LOC105371090 Gene

GeneLoc Exon Structure for
LOC105371090

No data available for mRNA/cDNA for LOC105371090 Gene

Expression for LOC105371090 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371090 Gene

Orthologs for LOC105371090 Gene

No data available for Orthologs and Evolution for LOC105371090 Gene

Paralogs for LOC105371090 Gene

No data available for Paralogs for LOC105371090 Gene

Variants for LOC105371090 Gene

Sequence variations from dbSNP and Humsavar for LOC105371090 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000011067 -- 12,756,374(+) T/G intron_variant
rs1000242975 -- 12,747,611(+) C/A/T intron_variant
rs1000584294 -- 12,757,265(+) C/T intron_variant
rs1000588418 -- 12,751,450(+) T/A intron_variant
rs1000617794 -- 12,751,214(+) G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371090 Gene

Disorders for LOC105371090 Gene

No disorders were found for LOC105371090 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371090 Gene

Publications for LOC105371090 Gene

No publications were found for LOC105371090 Gene.

No data available for External Links for LOC105371090 Gene

Products for LOC105371090 Gene

Sources for LOC105371090 Gene

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