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Aliases for LOC105371089 Gene

Subcategory (RNA class) for LOC105371089 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371089 Gene

  • Uncharacterized LOC105371089 3
  • CTD-2583P5.3 3
  • AC109597.2 5

External Ids for LOC105371089 Gene

Previous GeneCards Identifiers for LOC105371089 Gene

  • GC16U902125

Summaries for LOC105371089 Gene

GeneCards Summary for LOC105371089 Gene

LOC105371089 (Uncharacterized LOC105371089) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371089 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371089 Gene

Genomics for LOC105371089 Gene

GeneHancer (GH) Regulatory Elements for LOC105371089 Gene

Promoters and enhancers for LOC105371089 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012757 Enhancer 1.1 Ensembl ENCODE 650.7 -0.8 -831 1.4 FOXA2 PKNOX1 ATF1 FEZF1 YY1 GATA2 ATF7 RXRA TSHZ1 REST LOC105371089 CPPED1 LOC105371090
GH16J012759 Enhancer 0.6 ENCODE 650.7 +0.2 217 0.2 SOX5 SOX13 TEAD3 SP1 SKI CEBPA HNF4A SMAD4 LOC105371089 CPPED1
GH16J011790 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.1 -963.3 -963260 10.1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC SSRP1 ZC3H7A ENSG00000277369 GC16P011798 NPIPB2 TNP2 ENSG00000262020 ENSG00000261293 ENSG00000199668 ENSG00000212228 PRM3
GH16J011780 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 4.9 -976.1 -976142 5.2 HDGF PKNOX1 SMAD1 ARNT FEZF1 YBX1 IRF4 ZNF48 ATF7 RUNX3 ZC3H7A LOC105371084 HNRNPCP4 ENSG00000261560 RSL1D1 COX6CP1 LOC105371089 TXNDC11 ENSG00000274505
GH16J011809 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.8 -948.9 -948888 1.7 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 ATF7 RUNX3 NFKBIZ ZC3H7A ENSG00000261560 LOC105371084 COX6CP1 HNRNPCP4 TXNDC11 RSL1D1 ENSG00000261216 SOCS1 LOC105371089
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371089 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371089 Gene

Genomic Locations for LOC105371089 Gene
chr16:12,759,162-12,761,162
(GRCh38/hg38)
Size:
2,001 bases
Orientation:
Plus strand
chr16:12,853,139-12,855,019
(GRCh37/hg19)
Size:
1,881 bases
Orientation:
Plus strand

Genomic View for LOC105371089 Gene

Genes around LOC105371089 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371089 Gene

Proteins for LOC105371089 Gene

Post-translational modifications for LOC105371089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371089 Gene

Domains & Families for LOC105371089 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371089 Gene

Function for LOC105371089 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371089 Gene

Localization for LOC105371089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371089 Gene

Pathways & Interactions for LOC105371089 Gene

SuperPathways for LOC105371089 Gene

No Data Available

Interacting Proteins for LOC105371089 Gene

Gene Ontology (GO) - Biological Process for LOC105371089 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371089 Gene

Drugs & Compounds for LOC105371089 Gene

No Compound Related Data Available

Transcripts for LOC105371089 Gene

mRNA/cDNA for LOC105371089 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371089 Gene

No ASD Table

Relevant External Links for LOC105371089 Gene

GeneLoc Exon Structure for
LOC105371089

Expression for LOC105371089 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371089 Gene

Orthologs for LOC105371089 Gene

Evolution for LOC105371089 Gene

ENSEMBL:
Gene Tree for LOC105371089 (if available)
TreeFam:
Gene Tree for LOC105371089 (if available)

No data available for Orthologs for LOC105371089 Gene

Paralogs for LOC105371089 Gene

No data available for Paralogs for LOC105371089 Gene

Variants for LOC105371089 Gene

Sequence variations from dbSNP and Humsavar for LOC105371089 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000584294 -- 12,757,265(+) C/T upstream_transcript_variant
rs1000655727 -- 12,758,387(+) G/A upstream_transcript_variant
rs1000861079 -- 12,760,386(+) G/A non_coding_transcript_variant
rs1000913447 -- 12,760,165(+) T/C intron_variant
rs1001744920 -- 12,759,269(+) G/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371089 Gene

Disorders for LOC105371089 Gene

No disorders were found for LOC105371089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371089 Gene

Publications for LOC105371089 Gene

No publications were found for LOC105371089 Gene.

Products for LOC105371089 Gene

Sources for LOC105371089 Gene

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