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Aliases for LOC105371088 Gene

Subcategory (RNA class) for LOC105371088 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371088 Gene

  • Uncharacterized LOC105371088 3

External Ids for LOC105371088 Gene

Previous GeneCards Identifiers for LOC105371088 Gene

  • GC16U901917

Summaries for LOC105371088 Gene

GeneCards Summary for LOC105371088 Gene

LOC105371088 (Uncharacterized LOC105371088) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371088 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371088 Gene

Genomics for LOC105371088 Gene

GeneHancer (GH) Regulatory Elements for LOC105371088 Gene

Promoters and enhancers for LOC105371088 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012643 Enhancer 1.2 Ensembl ENCODE 0.4 +8.8 8830 1.8 ZNF652 ELF3 CEBPG RERE TFE3 SP1 HNF1A PPARG SP5 CREM LOC105371088 GC16P012625
GH16J012661 Enhancer 0.9 ENCODE 0.4 -8.5 -8539 0.1 ZNF652 ELF3 CEBPG RERE AHR TFE3 PPARG SP5 ZNF644 KAT8 LOC105371088 MIR4718 CPPED1
GH16J012674 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -22.6 -22631 4.4 CBFA2T2 CREM SMARCA4 IKZF1 TCF12 EED RUNX3 TRIM24 NR2C2 FOSL1 CPPED1 LOC105371088 MIR4718
GH16J012646 Enhancer 0.9 ENCODE 0.4 +6.4 6427 1.5 ELF3 CBFA2T2 NKRF MLLT1 ZNF687 RELA SP1 ZNF639 SMARCA4 IKZF1 LOC105371088 GC16P012625
GH16J012638 Enhancer 0.4 ENCODE 0.4 +14.3 14277 0.9 CEBPG MAX NFYC GC16P012625 LOC105371088
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371088 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371088 Gene

Genomic Locations for LOC105371088 Gene
chr16:12,651,918-12,653,370
(GRCh38/hg38)
Size:
1,453 bases
Orientation:
Minus strand

Genomic View for LOC105371088 Gene

Genes around LOC105371088 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371088 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371088 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371088 Gene

Proteins for LOC105371088 Gene

Post-translational modifications for LOC105371088 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371088 Gene

Domains & Families for LOC105371088 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371088 Gene

Function for LOC105371088 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371088 Gene

Localization for LOC105371088 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371088 Gene

Pathways & Interactions for LOC105371088 Gene

PathCards logo

SuperPathways for LOC105371088 Gene

No Data Available

Interacting Proteins for LOC105371088 Gene

Gene Ontology (GO) - Biological Process for LOC105371088 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371088 Gene

Drugs & Compounds for LOC105371088 Gene

No Compound Related Data Available

Transcripts for LOC105371088 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371088 Gene

No ASD Table

Relevant External Links for LOC105371088 Gene

GeneLoc Exon Structure for
LOC105371088

No data available for mRNA/cDNA for LOC105371088 Gene

Expression for LOC105371088 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371088 Gene

Orthologs for LOC105371088 Gene

No data available for Orthologs and Evolution for LOC105371088 Gene

Paralogs for LOC105371088 Gene

No data available for Paralogs for LOC105371088 Gene

Variants for LOC105371088 Gene

Sequence variations from dbSNP and Humsavar for LOC105371088 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000206372 -- 12,651,647(-) C/A/G downstream_transcript_variant
rs1000536092 -- 12,655,346(-) G/A/T upstream_transcript_variant
rs1001155136 -- 12,654,522(-) C/T upstream_transcript_variant
rs1001435618 -- 12,652,792(-) G/A/T intron_variant
rs1002452138 -- 12,653,665(-) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371088 Gene

Disorders for LOC105371088 Gene

No disorders were found for LOC105371088 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371088 Gene

Publications for LOC105371088 Gene

No publications were found for LOC105371088 Gene.

No data available for External Links for LOC105371088 Gene

Products for LOC105371088 Gene

Sources for LOC105371088 Gene

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