Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371085 Gene

Subcategory (RNA class) for LOC105371085 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371085 Gene

  • Uncharacterized LOC105371085 3
  • CTD-3037G24.4 3

External Ids for LOC105371085 Gene

Previous GeneCards Identifiers for LOC105371085 Gene

  • GC16U902199

Summaries for LOC105371085 Gene

GeneCards Summary for LOC105371085 Gene

LOC105371085 (Uncharacterized LOC105371085) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371085 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371085 Gene

Genomics for LOC105371085 Gene

GeneHancer (GH) Regulatory Elements for LOC105371085 Gene

Promoters and enhancers for LOC105371085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012570 Enhancer 0.6 ENCODE 600.7 -1.9 -1880 0.1 CEBPG SP1 RXRA CEBPA JUND CEBPB RAD21 HNF4A MAX REST LOC105371085 SNX29 ENSG00000259899
GH16J012565 Enhancer 0.2 Ensembl 600.7 +1.7 1698 2.8 LOC105371085 SNX29 ENSG00000259876 ENSG00000259899
GH16J012573 Enhancer 0.6 ENCODE 0.7 -4.9 -4900 0.2 CREM IKZF1 IKZF2 CTCF CBFB EED RUNX3 EBF1 ATF2 NFATC1 SNX29 LOC105371085 ENSG00000259899
GH16J012574 Enhancer 0.9 ENCODE 0.4 -5.5 -5470 0.2 CC2D1A ELF3 CTCF ZKSCAN8 TFE3 PPARG MLLT1 ZNF384 RAD21 KAT8 SNX29 LOC105371085 ENSG00000259899
GH16J012584 Enhancer 0.8 ENCODE 0.4 -16.3 -16290 0 ELF3 CEBPG ZNF644 SMARCA4 SOX13 CEBPA GATAD2A RXRB RCOR2 IRF2 LOC105371085 ENSG00000259899
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371085 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371085 Gene

Genomic Locations for LOC105371085 Gene
chr16:12,550,538-12,568,499
(GRCh38/hg38)
Size:
17,962 bases
Orientation:
Minus strand

Genomic View for LOC105371085 Gene

Genes around LOC105371085 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371085 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371085 Gene

Proteins for LOC105371085 Gene

Post-translational modifications for LOC105371085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371085 Gene

Domains & Families for LOC105371085 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371085 Gene

Function for LOC105371085 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371085 Gene

Localization for LOC105371085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371085 Gene

Pathways & Interactions for LOC105371085 Gene

PathCards logo

SuperPathways for LOC105371085 Gene

No Data Available

Interacting Proteins for LOC105371085 Gene

Gene Ontology (GO) - Biological Process for LOC105371085 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371085 Gene

Drugs & Compounds for LOC105371085 Gene

No Compound Related Data Available

Transcripts for LOC105371085 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371085 Gene

No ASD Table

Relevant External Links for LOC105371085 Gene

GeneLoc Exon Structure for
LOC105371085

No data available for mRNA/cDNA for LOC105371085 Gene

Expression for LOC105371085 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371085 Gene

Orthologs for LOC105371085 Gene

No data available for Orthologs and Evolution for LOC105371085 Gene

Paralogs for LOC105371085 Gene

No data available for Paralogs for LOC105371085 Gene

Variants for LOC105371085 Gene

Sequence variations from dbSNP and Humsavar for LOC105371085 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000008671 -- 12,549,601(-) C/T non_coding_transcript_variant
rs1000017119 -- 12,556,464(-) G/A genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000071424 -- 12,569,662(-) T/A upstream_transcript_variant
rs1000130418 -- 12,545,438(-) C/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000152125 -- 12,563,668(-) GAGAG/GAG genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371085 Gene

Disorders for LOC105371085 Gene

No disorders were found for LOC105371085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371085 Gene

Publications for LOC105371085 Gene

No publications were found for LOC105371085 Gene.

No data available for External Links for LOC105371085 Gene

Products for LOC105371085 Gene

Sources for LOC105371085 Gene

Content
Loading form....