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Aliases for LOC105371084 Gene

Subcategory (RNA class) for LOC105371084 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371084 Gene

  • Uncharacterized LOC105371084 3
  • AC007216.4 5

External Ids for LOC105371084 Gene

Previous GeneCards Identifiers for LOC105371084 Gene

  • GC16U902184

Summaries for LOC105371084 Gene

GeneCards Summary for LOC105371084 Gene

LOC105371084 (Uncharacterized LOC105371084) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371084 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371084 Gene

Genomics for LOC105371084 Gene

GeneHancer (GH) Regulatory Elements for LOC105371084 Gene

Promoters and enhancers for LOC105371084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J011850 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 0.0 -21 2.6 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 RSL1D1 LOC105371084 NPIPB2 PRM2 HNRNPCP4 PRM1 ENSG00000261560 BCAR4
GH16J012799 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 62.5 +950.5 950458 5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 CPPED1 ENSG00000261560 LOC105371084 COX6CP1 NPIPB2 ENSG00000261216 LOC105371090 RPL35AP34 LOC105371091 ENSG00000261293
GH16J012061 Enhancer 1.3 Ensembl ENCODE dbSUPER 93.2 +211.2 211198 2.5 ZNF493 ZFP64 BRCA1 ZNF213 ZNF143 KLF7 FOS ZNF202 ZC3H11A REST LOC105371084 ENSG00000261560 HNRNPCP4 ZC3H7A NPIPB2 COX6CP1 ENSG00000261216 SOCS1 TXNDC11 RSL1D1
GH16J011975 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 34.9 +127.0 127045 6.4 HDGF SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 POLR2B NPIPB2 ENSG00000260488 SNX29 LOC105371084 ENSG00000261560 HNRNPCP4 COX6CP1 GSPT1 ENSG00000261216 TXNDC11
GH16J011639 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 39.8 -210.9 -210910 3.3 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A YBX1 DMAP1 ZNF2 YY1 SLC30A9 LITAF LOC105371084 HNRNPCP4 ENSG00000261560 COX6CP1 ZC3H7A TNP2 ENSG00000261216 TXNDC11 ENSG00000262020
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371084 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371084 Gene

Genomic Locations for LOC105371084 Gene
chr16:11,851,568-11,896,551
(GRCh38/hg38)
Size:
44,984 bases
Orientation:
Plus strand
chr16:11,945,506-11,989,468
(GRCh37/hg19)
Size:
43,963 bases
Orientation:
Plus strand

Genomic View for LOC105371084 Gene

Genes around LOC105371084 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371084 Gene

Proteins for LOC105371084 Gene

Post-translational modifications for LOC105371084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371084 Gene

Domains & Families for LOC105371084 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371084 Gene

Function for LOC105371084 Gene

Phenotypes From GWAS Catalog for LOC105371084 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371084 Gene

Localization for LOC105371084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371084 Gene

Pathways & Interactions for LOC105371084 Gene

SuperPathways for LOC105371084 Gene

No Data Available

Interacting Proteins for LOC105371084 Gene

Gene Ontology (GO) - Biological Process for LOC105371084 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371084 Gene

Drugs & Compounds for LOC105371084 Gene

No Compound Related Data Available

Transcripts for LOC105371084 Gene

mRNA/cDNA for LOC105371084 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371084 Gene

No ASD Table

Relevant External Links for LOC105371084 Gene

GeneLoc Exon Structure for
LOC105371084

Expression for LOC105371084 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371084 Gene

Orthologs for LOC105371084 Gene

Evolution for LOC105371084 Gene

ENSEMBL:
Gene Tree for LOC105371084 (if available)
TreeFam:
Gene Tree for LOC105371084 (if available)

No data available for Orthologs for LOC105371084 Gene

Paralogs for LOC105371084 Gene

No data available for Paralogs for LOC105371084 Gene

Variants for LOC105371084 Gene

Sequence variations from dbSNP and Humsavar for LOC105371084 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000027757 -- 11,887,816(+) C/G intron_variant
rs1000094690 -- 11,886,304(+) T/C intron_variant
rs1000114585 -- 11,881,891(+) T/A intron_variant
rs1000137660 -- 11,855,747(+) T/C intron_variant
rs1000166899 -- 11,881,699(+) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371084 Gene

Disorders for LOC105371084 Gene

No disorders were found for LOC105371084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371084 Gene

Publications for LOC105371084 Gene

No publications were found for LOC105371084 Gene.

Products for LOC105371084 Gene

Sources for LOC105371084 Gene

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