Free for academic non-profit institutions. Other users need a Commercial license

LOC105371083 Gene(RNA Gene)

Uncharacterized LOC105371083

GCID:
GC16M011342
GIFtS:
7
Genes Participants
UDN Logo

Aliases for LOC105371083 Gene

Subcategory (RNA class) for LOC105371083 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105371083 Gene

  • Uncharacterized LOC105371083 3
  • AC009121.2 5

External Ids for LOC105371083 Gene

Previous GeneCards Identifiers for LOC105371083 Gene

  • GC16U901970

Summaries for LOC105371083 Gene

GeneCards Summary for LOC105371083 Gene

LOC105371083 (Uncharacterized LOC105371083) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371083 Gene

Genomics for LOC105371083 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC105371083 Gene

Promoters and enhancers for LOC105371083 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I011344 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 560.2 -0.1 -74 1.8 PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 RMI2 LOC105371083 LOC105371084 ENSG00000261560 GSPT1 ZC3H7A SOCS1 HNRNPCP4 RSL1D1 PRM2
GH16I011251 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 7.4 +90.7 90670 6.8 HDGF SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B SOCS1 RMI2 ENSG00000261560 RSL1D1 LOC105371084 GSPT1 HNRNPCP4 ZC3H7A LOC105371083 LOC105371082
GH16I011296 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.2 +47.0 47049 4.2 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 YBX1 PIR58691 RMI2 SOCS1 ENSG00000212228 PRM2 PRM3 TNP2 DEXI CLEC16A LOC105371083
GH16I011333 Enhancer 0.9 ENCODE dbSUPER 15.5 +11.4 11419 0.9 NCOA3 PKNOX1 ESRRA NEUROD1 SIN3A CTBP1 GATA3 EGR1 HSF1 RCOR1 RMI2 LOC105371083 ENSG00000199668 LOC105371082 GC16P010485
GH16I011326 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.3 +16.5 16463 4.2 HDGF PKNOX1 FOXA2 SIN3A IRF4 ETS1 ZNF121 ZNF143 ATF7 FOS RMI2 SOCS1 LOC105371083 CIITA LITAF ZC3H7A TXNDC11 ENSG00000199668 LOC105371082 GC16P010485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105371083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371083 Gene

Genomic Locations for LOC105371083 Gene
chr16:11,341,809-11,345,299
(GRCh38/hg38)
Size:
3,491 bases
Orientation:
Minus strand
chr16:11,435,666-11,439,068
(GRCh37/hg19)

Genomic View for LOC105371083 Gene

Genes around LOC105371083 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371083 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371083 Gene

Proteins for LOC105371083 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371083 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371083 Gene

Domains & Families for LOC105371083 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371083 Gene

Function for LOC105371083 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105371083 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371083 Gene

Localization for LOC105371083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371083 Gene

Pathways & Interactions for LOC105371083 Gene

SuperPathways for LOC105371083 Gene

PathCards logo More details on SuperPathways for LOC105371083
No Data Available

Interacting Proteins for LOC105371083 Gene

Gene Ontology (GO) - Biological Process for LOC105371083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371083 Gene

Drugs & Compounds for LOC105371083 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371083 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105371083 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371083 Gene

No ASD Table

Relevant External Links for LOC105371083 Gene

GeneLoc Exon Structure for
LOC105371083

Expression for LOC105371083 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371083 Gene

Orthologs for LOC105371083 Gene

Evolution for LOC105371083 Gene

ENSEMBL:
Gene Tree for LOC105371083 (if available)
TreeFam:
Gene Tree for LOC105371083 (if available)

No data available for Orthologs for LOC105371083 Gene

Paralogs for LOC105371083 Gene

No data available for Paralogs for LOC105371083 Gene

Variants for LOC105371083 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC105371083 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1001009019 -- 11,346,731(-) C/G upstream_transcript_variant
rs1001050131 -- 11,345,974(-) G/A upstream_transcript_variant
rs1001161385 -- 11,343,147(-) A/G intron_variant
rs1002138506 -- 11,341,422(-) C/T downstream_transcript_variant
rs1002140615 -- 11,345,150(-) C/G/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371083 Gene

Disorders for LOC105371083 Gene

Additional Disease Information for LOC105371083

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC105371083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371083 Gene

Publications for LOC105371083 Gene

No publications were found for LOC105371083 Gene.

Products for LOC105371083 Gene

Sources for LOC105371083 Gene

Content
Loading form....