Aliases for LOC105371046 Gene

Subcategory (RNA class) for LOC105371046 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105371046 Gene

  • Uncharacterized LOC105371046 3
  • Novel Transcript, Antisense To IFT140 5
  • NONHSAG018266.2 91
  • HSALNG0108918 164
  • Lnc-CRAMP1-1 165
  • AL133297.2 5

External Ids for LOC105371046 Gene

Previous GeneCards Identifiers for LOC105371046 Gene

  • GC16U902165
  • GC16P001581
  • GC16P001606

Summaries for LOC105371046 Gene

GeneCards Summary for LOC105371046 Gene

LOC105371046 (Uncharacterized LOC105371046) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105371046 include Retinal Ciliopathy Due To Mutation In The Retinitis Pigmentosa-1 Gene and Retinitis Pigmentosa 80.

Additional gene information for LOC105371046 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371046 Gene

Genomics for LOC105371046 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105371046 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001580 Enhancer 0.3 Ensembl 600.7 -0.1 -126 0.4 ZSCAN5C ENSG00000260954 LOC105371046 IFT140 TMEM204
GH16J001609 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 0.3 +32.3 32340 7.1 RNF2 SP1 HNRNPL CREB1 TEAD4 PRDM10 ZNF629 TFE3 RFX1 LEF1 CRAMP1 IFT140 5EW4_A-020 MN297339 piR-33169 WDR90 TELO2 TSC2 NUBP2 WDR24
GH16J001607 Enhancer 0.3 Ensembl ENCODE 0.3 +27.5 27539 0.9 IFT140 TMEM204 EME2 piR-53431-226 LOC105371046
GH16J001595 Enhancer 0.3 Ensembl 0.4 +15.3 15274 1.2 FOXA1 MN297338 piR-42491-077 IFT140 TMEM204 piR-43099-206 LOC105371046
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371046 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105371046 Gene

Genomic Locations for LOC105371046 Gene
chr16:1,580,527-1,610,328
(GRCh38/hg38)
Size:
29,802 bases
Orientation:
Plus strand
chr16:1,630,528-1,660,329
(GRCh37/hg19)
Size:
29,802 bases
Orientation:
Plus strand

Genomic View for LOC105371046 Gene

Genes around LOC105371046 on UCSC Golden Path with GeneCards custom track
LOC105371046 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105371046 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371046 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371046 Gene

Proteins for LOC105371046 Gene

Post-translational modifications for LOC105371046 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371046 Gene

Domains & Families for LOC105371046 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371046 Gene

Function for LOC105371046 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371046 Gene

Localization for LOC105371046 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371046 Gene

Pathways & Interactions for LOC105371046 Gene

PathCards logo

SuperPathways for LOC105371046 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371046 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105371046 Gene

Drugs & Compounds for LOC105371046 Gene

No Compound Related Data Available

Transcripts for LOC105371046 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371046 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002669EB_9606 lncRNA 485 4

Ensembl: ENST00000563162 (view in UCSC) ,

LncBook: HSALNT0226455,

LNCipedia: lnc-CRAMP1-1:1,

NONCODE: NONHSAT051984.2,

URS0000A768D9_9606 lncRNA 485 1

RefSeq: NR_135176,

LOC105371046 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105371046 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371046 Gene

No ASD Table

Relevant External Links for LOC105371046 Gene

GeneLoc Exon Structure for
LOC105371046

Expression for LOC105371046 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371046 Gene

Orthologs for LOC105371046 Gene

Evolution for LOC105371046 Gene

ENSEMBL:
Gene Tree for LOC105371046 (if available)
TreeFam:
Gene Tree for LOC105371046 (if available)

No data available for Orthologs for LOC105371046 Gene

Paralogs for LOC105371046 Gene

No data available for Paralogs for LOC105371046 Gene

Variants for LOC105371046 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105371046 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
707466 Benign: Renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia and skeletal dysplasia 1,586,201(+) C/T MISSENSE_VARIANT
729063 Likely Benign: not provided 1,602,556(+) C/T SYNONYMOUS_VARIANT
731889 Likely Benign: not provided 1,589,647(+) C/T SYNONYMOUS_VARIANT
734017 Likely Benign: not provided 1,580,751(+) C/T INTRON_VARIANT
742822 Likely Benign: Renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia and skeletal dysplasia 1,588,031(+) G/A INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC105371046 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371046 Gene

Disorders for LOC105371046 Gene

MalaCards: The human disease database

(7) MalaCards diseases for LOC105371046 Gene - From: GeneCards

- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371046: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371046 Gene

Publications for LOC105371046 Gene

No publications were found for LOC105371046 Gene.

No data available for Mastermind for LOC105371046 Gene

Products for LOC105371046 Gene

Sources for LOC105371046 Gene