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Aliases for LOC105371016 Gene

Subcategory (RNA class) for LOC105371016 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371016 Gene

  • Uncharacterized LOC105371016 3

External Ids for LOC105371016 Gene

Previous GeneCards Identifiers for LOC105371016 Gene

  • GC15U901865
  • GC15M098957
  • GC15M099618
  • GC15M099073
  • GC15M099193
  • GC15M099516

Summaries for LOC105371016 Gene

GeneCards Summary for LOC105371016 Gene

LOC105371016 (Uncharacterized LOC105371016) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371016 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371016 Gene

Genomics for LOC105371016 Gene

GeneHancer (GH) Regulatory Elements for LOC105371016 Gene

Promoters and enhancers for LOC105371016 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J099104 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 +1.7 1676 3.8 CTCF POLR2A ZNF687 AHR NCOA6 SP7 KLF14 MLLT1 RAD21 KAT8 SYNM LOC105371016 PIR44206 ENSG00000259475 ENSG00000261616 TTC23 LRRC28
GH15J099100 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +7.4 7394 0.8 CTCF SP7 PRDM1 RAD21 IKZF1 CREB1 GLIS2 ZBTB8A ZNF600 ZIC2 ENSG00000261616 SYNM LOC105371016 ENSG00000259475
GH15J099111 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -2.8 -2806 2 RUNX3 NR2F1 BATF EBF1 TTC23 SYNM LRRC28 ENSG00000261054 LOC105371016 PIR61097
GH15J099122 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 -16.6 -16578 4.2 NFIB ZSCAN21 MAFK TFE3 SP7 PPARG PRDM1 MZF1 ZNF680 GLIS2 SYNM ENSG00000261616 ENSG00000261054 TTC23 LRRC28 PIR61097 LOC105371016
GH15J099090 Enhancer 0.9 Ensembl dbSUPER 0.4 +17.6 17594 2 SP1 ZNF687 RELA MLLT1 IKZF1 BACH1 IKZF2 TRIM22 CBFB YBX1 ENSG00000261054 SYNM LOC105371016 ENSG00000259475 GC15M101452
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371016 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371016 Gene

Genomic Locations for LOC105371016 Gene
chr15:99,090,904-99,107,995
(GRCh38/hg38)
Size:
17,092 bases
Orientation:
Minus strand
chr15:98,957,508-98,964,202
(GRCh37/hg19)
Size:
6,695 bases
Orientation:
Minus strand

Genomic View for LOC105371016 Gene

Genes around LOC105371016 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371016 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371016 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371016 Gene

Proteins for LOC105371016 Gene

Post-translational modifications for LOC105371016 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371016 Gene

Domains & Families for LOC105371016 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371016 Gene

Function for LOC105371016 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371016 Gene

Localization for LOC105371016 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371016 Gene

Pathways & Interactions for LOC105371016 Gene

PathCards logo

SuperPathways for LOC105371016 Gene

No Data Available

Interacting Proteins for LOC105371016 Gene

Gene Ontology (GO) - Biological Process for LOC105371016 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371016 Gene

Drugs & Compounds for LOC105371016 Gene

No Compound Related Data Available

Transcripts for LOC105371016 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371016 Gene

No ASD Table

Relevant External Links for LOC105371016 Gene

GeneLoc Exon Structure for
LOC105371016

No data available for mRNA/cDNA for LOC105371016 Gene

Expression for LOC105371016 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371016 Gene

Orthologs for LOC105371016 Gene

No data available for Orthologs and Evolution for LOC105371016 Gene

Paralogs for LOC105371016 Gene

No data available for Paralogs for LOC105371016 Gene

Variants for LOC105371016 Gene

Sequence variations from dbSNP and Humsavar for LOC105371016 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs60530833 benign, not specified 99,105,902(-) G/GG intron_variant
rs1000075766 -- 99,106,284(-) C/G intron_variant
rs1000165505 -- 99,084,517(-) G/C genic_downstream_transcript_variant, intron_variant
rs1000279153 -- 99,090,058(-) G/C genic_downstream_transcript_variant, intron_variant
rs1000339259 -- 99,096,027(-) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371016 Gene

Disorders for LOC105371016 Gene

No disorders were found for LOC105371016 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371016 Gene

Publications for LOC105371016 Gene

No publications were found for LOC105371016 Gene.

No data available for External Links for LOC105371016 Gene

Products for LOC105371016 Gene

Sources for LOC105371016 Gene

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