Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105370959 Gene

Subcategory (RNA class) for LOC105370959 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105370959 Gene

  • Uncharacterized LOC105370959 3

External Ids for LOC105370959 Gene

Previous GeneCards Identifiers for LOC105370959 Gene

  • GC15U902032

Summaries for LOC105370959 Gene

GeneCards Summary for LOC105370959 Gene

LOC105370959 (Uncharacterized LOC105370959) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105370959 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105370959 Gene

Genomics for LOC105370959 Gene

GeneHancer (GH) Regulatory Elements for LOC105370959 Gene

Promoters and enhancers for LOC105370959 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J088374 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +30.9 30866 1.9 EGR1 PRDM10 SP1 ATF3 ZFHX2 FOSL2 CEBPG GLIS1 ZNF398 ZMYM3 LOC105370959 MRPL46
GH15J088400 Enhancer 1.3 VISTA FANTOM5 ENCODE dbSUPER 0.2 +56.8 56774 3.1 POLR2A EZH2 SIN3A LOC105370959 MRPL46
GH15J088462 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.1 +120.9 120920 5.9 MTA3 SP1 ZFX ELF3 ZNF148 NKRF ZNF121 CEBPG RERE POLR2A MRPS11 MRPL46 POLG ENSG00000173867 AEN LOC105370959
GH15J088388 Enhancer 0.9 ENCODE dbSUPER 0.3 +43.9 43943 0.2 CEBPG HNF1A KAT8 CEBPA GATAD2A REST SOX13 TCF7 SP1 ATF3 MRPS11 MRPL46 ENSG00000173867 LOC105370959
GH15J088389 Enhancer 0.9 Ensembl dbSUPER 0.3 +43.7 43659 0.4 HNF1A KAT8 GATAD2A REST TCF7 SP1 ATF3 ZBTB25 SAP130 CREM MRPS11 MRPL46 ENSG00000173867 LOC105370959
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370959 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370959 Gene

Genomic Locations for LOC105370959 Gene
chr15:88,344,942-88,364,656
(GRCh38/hg38)
Size:
19,715 bases
Orientation:
Plus strand

Genomic View for LOC105370959 Gene

Genes around LOC105370959 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370959 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370959 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370959 Gene

Proteins for LOC105370959 Gene

Post-translational modifications for LOC105370959 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370959 Gene

Domains & Families for LOC105370959 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105370959 Gene

Function for LOC105370959 Gene

Phenotypes From GWAS Catalog for LOC105370959 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370959 Gene

Localization for LOC105370959 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370959 Gene

Pathways & Interactions for LOC105370959 Gene

PathCards logo

SuperPathways for LOC105370959 Gene

No Data Available

Interacting Proteins for LOC105370959 Gene

Gene Ontology (GO) - Biological Process for LOC105370959 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105370959 Gene

Drugs & Compounds for LOC105370959 Gene

No Compound Related Data Available

Transcripts for LOC105370959 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370959 Gene

No ASD Table

Relevant External Links for LOC105370959 Gene

GeneLoc Exon Structure for
LOC105370959

No data available for mRNA/cDNA for LOC105370959 Gene

Expression for LOC105370959 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370959 Gene

Orthologs for LOC105370959 Gene

No data available for Orthologs and Evolution for LOC105370959 Gene

Paralogs for LOC105370959 Gene

No data available for Paralogs for LOC105370959 Gene

Variants for LOC105370959 Gene

Sequence variations from dbSNP and Humsavar for LOC105370959 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000111181 -- 88,352,111(+) G/T intron_variant
rs1000178847 -- 88,363,933(+) T/C intron_variant
rs1000247907 -- 88,354,874(+) G/A intron_variant
rs1000380840 -- 88,346,097(+) C/G intron_variant
rs1000424357 -- 88,361,543(+) GAAA/GAAAGAAA intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370959 Gene

Disorders for LOC105370959 Gene

No disorders were found for LOC105370959 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370959 Gene

Publications for LOC105370959 Gene

No publications were found for LOC105370959 Gene.

No data available for External Links for LOC105370959 Gene

Products for LOC105370959 Gene

Sources for LOC105370959 Gene

Content
Loading form....