Aliases for LOC105370943 Gene

Data sources for LOC105370943 Gene:

RNA type for LOC105370943 Gene

lncRNA

Aliases for LOC105370943 Gene

External Ids for LOC105370943 Gene

Previous GeneCards Identifiers for LOC105370943 Gene

  • GC15U902195
  • GC15P040904
  • GC15P040913

Summaries for LOC105370943 Gene

GeneCards Summary for LOC105370943 Gene

LOC105370943 (Uncharacterized LOC105370943) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105370943 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105370943 Gene

Genomics for LOC105370943 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105370943 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040905 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.6 623 3.7 BCLAF1 ZNF654 IKZF1 MYC ZNF580 KLF9 POLR2A NFIC ZIC2 ZBTB10 ENSG00000251161 HSALNG0105310 HSALNG0105311 LOC105370943 CHAC1 RHOV CHP1 EXD1 DLL4 VPS18
GH15J040909 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.7 +4.4 4437 2.4 CEBPA YY1 NR2C1 SMAD4 RXRA SAP130 ETV4 RARA GABPB1 TEAD3 CHAC1 SPINT1 CHP1 EXD1 ZFYVE19 ENSG00000251161 HSALNG0105310 HSALNG0105311 LOC105370943 HSALNG0105312
GH15J040902 Enhancer 1.1 ENCODE dbSUPER 0.7 -2.7 -2721 2.4 BCLAF1 ZNF654 CEBPA BRCA1 CTCF REST CEBPB KLF11 DEK TRIM22 LOC105370943 VPS18 piR-32214-202 DLL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370943 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105370943 Gene

Latest Assembly
chr15:40,906,297-40,910,319
(GRCh38/hg38)
Size:
4,023 bases
Orientation:
Plus strand

Previous Assembly
chr15:41,199,007-41,201,549
(GRCh37/hg19 by Entrez Gene)
Size:
2,543 bases
Orientation:
Plus strand

Genomic View for LOC105370943 Gene

Genes around LOC105370943 on UCSC Golden Path with GeneCards custom track
LOC105370943 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105370943 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370943 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370943 Gene

Proteins for LOC105370943 Gene

Post-translational modifications for LOC105370943 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370943 Gene

Domains & Families for LOC105370943 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105370943 Gene

Function for LOC105370943 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370943 Gene

Localization for LOC105370943 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370943 Gene

Pathways & Interactions for LOC105370943 Gene

PathCards logo

SuperPathways for LOC105370943 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105370943 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105370943 Gene

Drugs & Compounds for LOC105370943 Gene

No Compound Related Data Available

Transcripts for LOC105370943 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105370943 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76AD8_9606 lncRNA 600 2

RefSeq: NR_135836,

LNCipedia: lnc-VPS18-1:8,

URS00008C3361_9606 lncRNA 2343 3

LncBook: HSALNT0219123,

LNCipedia: lnc-VPS18-1:1,

NONCODE: NONHSAT041894.2,

URS00008B8C32_9606 lncRNA 1640 3

LncBook: HSALNT0219130,

LNCipedia: lnc-VPS18-1:6,

NONCODE: NONHSAT041898.2,

URS00008C3CBF_9606 lncRNA 970 3

LncBook: HSALNT0219125,

LNCipedia: lnc-VPS18-1:2,

NONCODE: NONHSAT041895.2,

URS00008BDDA4_9606 lncRNA 860 3

LncBook: HSALNT0219129,

LNCipedia: lnc-VPS18-1:5,

NONCODE: NONHSAT041897.2,

LOC105370943 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105370943 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370943 Gene

No ASD Table

Relevant External Links for LOC105370943 Gene

GeneLoc Exon Structure for
LOC105370943

Expression for LOC105370943 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370943 Gene

Orthologs for LOC105370943 Gene

No data available for Orthologs and Evolution for LOC105370943 Gene

Paralogs for LOC105370943 Gene

No data available for Paralogs for LOC105370943 Gene

Variants for LOC105370943 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105370943 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370943 Gene

Disorders for LOC105370943 Gene

No disorders were found for LOC105370943 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370943 Gene

Publications for LOC105370943 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC105370943 Gene

Products for LOC105370943 Gene

Sources for LOC105370943 Gene