Aliases for LOC105370941 Gene

Data sources for LOC105370941 Gene:

RNA type for LOC105370941 Gene

lncRNA

Aliases for LOC105370941 Gene

External Ids for LOC105370941 Gene

Previous GeneCards Identifiers for LOC105370941 Gene

  • GC15U902072

Summaries for LOC105370941 Gene

GeneCards Summary for LOC105370941 Gene

LOC105370941 (Uncharacterized LOC105370941) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105370941 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105370941 Gene

Genomics for LOC105370941 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105370941 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J039781 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.5 451 2.8 SP1 MYC ZNF207 SIX5 JUND ZNF580 ZMYM3 ATF2 POLR2A BRCA1 ENSG00000261136 FSIP1 LOC105370941 ENSG00000259580 GPR176
GH15J039785 Promoter 0.8 Ensembl 0.7 +2.9 2930 0.6 CTBP1 MAFF ZNF316 TCF7L2 CTCF ZNF217 FOXA1 MAFK FOS PRDM10 ENSG00000261136 FSIP1 LOC105370941 ENSG00000259580 GPR176
GH15J039776 Enhancer 0.6 Ensembl 0.4 -5.0 -5035 1.9 FEZF1 IRF4 FOSL2 ZFP91 FOXP1 BATF NRF1 NR2F6 JUNB MEIS2 ENSG00000261136 FSIP1 LOC105370941 ENSG00000259580 lnc-GPR176-2 THBS1
GH15J039756 Enhancer 0.7 Ensembl ENCODE 0.3 -25.5 -25523 0.5 ZNF654 CTCF REST TRIM22 RAD21 SMC3 RAD51 ZNF384 TOE1 ZNF579 FSIP1 THBS1 lnc-GPR176-2 LOC105370941 ENSG00000261136
GH15J039774 Enhancer 0.5 ENCODE 0.4 -7.6 -7602 0.7 BHLHE40 SCRT1 GATA2 IKZF1 CTBP1 RUNX3 SCRT2 ENSG00000261136 FSIP1 LOC105370941 lnc-GPR176-2 ENSG00000259580 THBS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370941 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105370941 Gene

Latest Assembly
chr15:39,782,571-39,785,617
(GRCh38/hg38)
Size:
3,047 bases
Orientation:
Plus strand

Previous Assembly
chr15:40,075,107-40,077,818
(GRCh37/hg19 by Entrez Gene)
Size:
2,712 bases
Orientation:
Plus strand

Genomic View for LOC105370941 Gene

Genes around LOC105370941 on UCSC Golden Path with GeneCards custom track
LOC105370941 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105370941 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370941 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370941 Gene

Proteins for LOC105370941 Gene

Post-translational modifications for LOC105370941 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370941 Gene

Domains & Families for LOC105370941 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105370941 Gene

Function for LOC105370941 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370941 Gene

Localization for LOC105370941 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370941 Gene

Pathways & Interactions for LOC105370941 Gene

PathCards logo

SuperPathways for LOC105370941 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105370941 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105370941 Gene

Drugs & Compounds for LOC105370941 Gene

No Compound Related Data Available

Transcripts for LOC105370941 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105370941 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A768DA_9606 lncRNA 2711 1

RefSeq: NR_135665,

URS0001BD33B0_9606 lncRNA 3047 1

LncBook: HSALNT0218881,

LOC105370941 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105370941 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370941 Gene

No ASD Table

Relevant External Links for LOC105370941 Gene

GeneLoc Exon Structure for
LOC105370941

Expression for LOC105370941 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105370941

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370941 Gene

Orthologs for LOC105370941 Gene

No data available for Orthologs and Evolution for LOC105370941 Gene

Paralogs for LOC105370941 Gene

No data available for Paralogs for LOC105370941 Gene

Variants for LOC105370941 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105370941 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370941 Gene

Disorders for LOC105370941 Gene

No disorders were found for LOC105370941 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370941 Gene

Publications for LOC105370941 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC105370941 Gene

Products for LOC105370941 Gene

Sources for LOC105370941 Gene