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Aliases for LOC105370941 Gene

Subcategory (RNA class) for LOC105370941 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105370941 Gene

  • Uncharacterized LOC105370941 3

External Ids for LOC105370941 Gene

Previous GeneCards Identifiers for LOC105370941 Gene

  • GC15U902072

Summaries for LOC105370941 Gene

GeneCards Summary for LOC105370941 Gene

LOC105370941 (Uncharacterized LOC105370941) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105370941 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105370941 Gene

Genomics for LOC105370941 Gene

GeneHancer (GH) Regulatory Elements for LOC105370941 Gene

Promoters and enhancers for LOC105370941 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J039781 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.6 607 2.8 SP1 CC2D1A ELF3 ZKSCAN8 MNT SIX5 ZNF148 NKRF POLR2A CSDE1 LOC105370941 FSIP1 ENSG00000261136 ENSG00000259580
GH15J039756 Enhancer 0.7 Ensembl ENCODE 0.3 -25.3 -25315 0.6 CTCF RAD21 REST TRIM22 SMC3 ZNF654 FSIP1 THBS1 LOC105370941 LOC105370785
GH15J039774 Enhancer 0.5 ENCODE 0.4 -7.4 -7446 0.7 IKZF1 SCRT2 CTBP1 RUNX3 SCRT1 LOC105370941 FSIP1 ENSG00000259580 LOC105370785
GH15J039698 Enhancer 1.1 Ensembl ENCODE 0.2 -83.2 -83159 1.5 CC2D1A CBFA2T2 MLLT1 GTF2F1 BACH1 MAFK TRIM24 ZNF639 SMARCA4 GMEB1 FSIP1 LOC105370785 LOC105370941
GH15J039704 Enhancer 1 Ensembl ENCODE 0.2 -77.6 -77600 1.2 CBFA2T2 BACH1 TRIM24 SMARCA4 GMEB1 DPF2 RFX1 ZNF512 PKNOX1 ZNF24 FSIP1 EIF2AK4 LOC105370941 LOC105370785
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370941 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370941 Gene

Genomic Locations for LOC105370941 Gene
chr15:39,782,415-39,785,617
(GRCh38/hg38)
Size:
3,203 bases
Orientation:
Plus strand

Genomic View for LOC105370941 Gene

Genes around LOC105370941 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370941 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370941 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370941 Gene

Proteins for LOC105370941 Gene

Post-translational modifications for LOC105370941 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370941 Gene

Domains & Families for LOC105370941 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105370941 Gene

Function for LOC105370941 Gene

Phenotypes From GWAS Catalog for LOC105370941 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370941 Gene

Localization for LOC105370941 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370941 Gene

Pathways & Interactions for LOC105370941 Gene

PathCards logo

SuperPathways for LOC105370941 Gene

No Data Available

Interacting Proteins for LOC105370941 Gene

Gene Ontology (GO) - Biological Process for LOC105370941 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105370941 Gene

Drugs & Compounds for LOC105370941 Gene

No Compound Related Data Available

Transcripts for LOC105370941 Gene

mRNA/cDNA for LOC105370941 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370941 Gene

No ASD Table

Relevant External Links for LOC105370941 Gene

GeneLoc Exon Structure for
LOC105370941

Expression for LOC105370941 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370941 Gene

Orthologs for LOC105370941 Gene

No data available for Orthologs and Evolution for LOC105370941 Gene

Paralogs for LOC105370941 Gene

No data available for Paralogs for LOC105370941 Gene

Variants for LOC105370941 Gene

Sequence variations from dbSNP and Humsavar for LOC105370941 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000288970 -- 39,782,795(+) C/T upstream_transcript_variant
rs1001698641 -- 39,781,382(+) T/C/G upstream_transcript_variant
rs1002051670 -- 39,782,647(+) G/C upstream_transcript_variant
rs1003196463 -- 39,784,942(+) C/T non_coding_transcript_variant
rs1004186483 -- 39,783,393(+) G/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370941 Gene

Disorders for LOC105370941 Gene

No disorders were found for LOC105370941 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370941 Gene

Publications for LOC105370941 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

No data available for External Links for LOC105370941 Gene

Products for LOC105370941 Gene

Sources for LOC105370941 Gene

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