Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105370839 Gene

Subcategory (RNA class) for LOC105370839 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105370839 Gene

  • Uncharacterized LOC105370839 3

External Ids for LOC105370839 Gene

Previous GeneCards Identifiers for LOC105370839 Gene

  • GC15U901932

Summaries for LOC105370839 Gene

GeneCards Summary for LOC105370839 Gene

LOC105370839 (Uncharacterized LOC105370839) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105370839 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105370839 Gene

Genomics for LOC105370839 Gene

GeneHancer (GH) Regulatory Elements for LOC105370839 Gene

Promoters and enhancers for LOC105370839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J060168 Enhancer 0.2 Ensembl 600.7 +1.2 1162 0.2 LOC105370839 GC15P060188
GH15J060165 Enhancer 0.2 Ensembl 600.7 -1.5 -1538 0.4 LOC105370839 ENSG00000259223
GH15J060117 Promoter/Enhancer 1 Ensembl ENCODE 0.3 -48.5 -48475 1.7 ZBTB44 WT1 NANOG POU5F1 ENSG00000259223 LOC105370839
GH15J060127 Enhancer 0.8 ENCODE 0.3 -39.2 -39150 1.4 ZNF148 CTCF ELF1 RELA SP1 RAD21 IKZF1 PRDM10 IKZF2 ATF1 ENSG00000259223 LOC105370839
GH15J060255 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +88.5 88462 2.4 TFE3 SP1 CREM ZNF644 SMARCA4 ZBED1 FOSL2 CREB1 PKNOX1 CEBPA LOC105370840 PIR59409 GC15M060194 GC15M060193 GC15M060192 LOC105370839
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370839 Gene

Genomic Locations for LOC105370839 Gene
chr15:60,166,939-60,255,832
(GRCh38/hg38)
Size:
88,894 bases
Orientation:
Plus strand

Genomic View for LOC105370839 Gene

Genes around LOC105370839 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370839 Gene

Proteins for LOC105370839 Gene

Post-translational modifications for LOC105370839 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370839 Gene

Domains & Families for LOC105370839 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105370839 Gene

Function for LOC105370839 Gene

Phenotypes From GWAS Catalog for LOC105370839 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370839 Gene

Localization for LOC105370839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370839 Gene

Pathways & Interactions for LOC105370839 Gene

PathCards logo

SuperPathways for LOC105370839 Gene

No Data Available

Interacting Proteins for LOC105370839 Gene

Gene Ontology (GO) - Biological Process for LOC105370839 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105370839 Gene

Drugs & Compounds for LOC105370839 Gene

No Compound Related Data Available

Transcripts for LOC105370839 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370839 Gene

No ASD Table

Relevant External Links for LOC105370839 Gene

GeneLoc Exon Structure for
LOC105370839

No data available for mRNA/cDNA for LOC105370839 Gene

Expression for LOC105370839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370839 Gene

Orthologs for LOC105370839 Gene

No data available for Orthologs and Evolution for LOC105370839 Gene

Paralogs for LOC105370839 Gene

No data available for Paralogs for LOC105370839 Gene

Variants for LOC105370839 Gene

Sequence variations from dbSNP and Humsavar for LOC105370839 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000028177 -- 60,223,904(+) G/C genic_upstream_transcript_variant, intron_variant
rs1000053031 -- 60,177,298(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000083695 -- 60,177,500(+) C/G/T genic_upstream_transcript_variant, intron_variant
rs1000106080 -- 60,194,036(+) T/A genic_upstream_transcript_variant, intron_variant
rs1000111680 -- 60,242,067(+) T/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370839 Gene

Disorders for LOC105370839 Gene

No disorders were found for LOC105370839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370839 Gene

Publications for LOC105370839 Gene

No publications were found for LOC105370839 Gene.

No data available for External Links for LOC105370839 Gene

Products for LOC105370839 Gene

Sources for LOC105370839 Gene

Content
Loading form....