LOC105370616 Gene (RNA Gene)

Uncharacterized LOC105370616

GC14M093621
GIFtS:
6

Aliases for LOC105370616 Gene

Subcategory (RNA class) for LOC105370616 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC105370616 Gene

  • Uncharacterized LOC105370616 3 5
  • NONHSAG015679 92
  • HSALNG0103099 167
  • Lnc-FOXN3-2 168
  • AL137230.1 5

External Ids for LOC105370616 Gene

Previous GeneCards Identifiers for LOC105370616 Gene

  • GC14U901774
  • GC14M090066
  • GC14M092344
  • GC14M092441
  • GC14M092713
  • GC14M090204
  • GC14M090499
  • GC14M090831
  • GC14M091104
  • GC14M091402
  • GC14M091689
  • GC14M091975
  • GC14M092245

Summaries for LOC105370616 Gene

GeneCards Summary for LOC105370616 Gene

LOC105370616 (Uncharacterized LOC105370616) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105370616 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105370616 Gene

Genomics for LOC105370616 Gene

GeneHancer (GH) Regulatory Elements for LOC105370616 Gene

Promoters and enhancers for LOC105370616 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14J089641 Enhancer 1.2 Ensembl ENCODE dbSUPER 505.6 +0.8 833 1.5 EP300 KDM6A RELA ZBTB25 TEAD1 ZKSCAN8 FOXA2 ZSCAN9 KMT2B SRF LOC105370616 lnc-TDP1-8 LOC105370617 ENSG00000259053
GH14J089630 Enhancer 0.9 Ensembl ENCODE dbSUPER 6.9 +12.0 12044 3.3 POLR2A EZH2 ZFHX2 SMARCA4 EGR2 FOS EGR1 PRDM1 CEBPB LOC105370616 lnc-TDP1-8 LOC105370617 ENSG00000259053
GH14J089658 Enhancer 0.8 Ensembl ENCODE 5 -17.1 -17130 2.4 JUND MXI1 GATA3 ZBTB33 CBX2 MAX HNF4A BHLHE40 RAD21 HNF4G RN7SKP107 FOXN3 LOC105370616 ENSG00000252655 lnc-TDP1-3 RN7SKP255 ENSG00000259053
GH14J089651 Enhancer 0.2 Ensembl 5.5 -9.4 -9430 0.6 ENSG00000252655 FOXN3 RN7SKP107 LOC105370616 lnc-TDP1-3 RN7SKP255 ENSG00000259053
GH14J089648 Enhancer 0.6 ENCODE 0.4 -6.1 -6131 0.1 FOXA2 NR2F2 ZBTB33 JUND RAD21 RXRA MAX HNF4A FOXA1 NFYC ENSG00000252655 LOC105370616 ENSG00000259053
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370616 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370616 Gene

Genomic Locations for LOC105370616 Gene
chr14:89,628,921-89,642,671
(GRCh38/hg38)
Size:
13,751 bases
Orientation:
Minus strand
chr14:90,095,265-90,109,015
(GRCh37/hg19)
Size:
13,751 bases
Orientation:
Minus strand

Genomic View for LOC105370616 Gene

Genes around LOC105370616 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370616 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370616 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105370616 Gene

Proteins for LOC105370616 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105370616 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370616 Gene

Domains & Families for LOC105370616 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105370616 Gene

Function for LOC105370616 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105370616 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370616 Gene

Localization for LOC105370616 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370616 Gene

Pathways & Interactions for LOC105370616 Gene

PathCards logo

SuperPathways for LOC105370616 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105370616 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105370616 Gene

Drugs & Compounds for LOC105370616 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105370616 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105370616 Gene

4 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370616 Gene

No ASD Table

Relevant External Links for LOC105370616 Gene

GeneLoc Exon Structure for
LOC105370616

Expression for LOC105370616 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370616 Gene

Orthologs for LOC105370616 Gene

Evolution for LOC105370616 Gene

ENSEMBL:
Gene Tree for LOC105370616 (if available)
TreeFam:
Gene Tree for LOC105370616 (if available)

No data available for Orthologs for LOC105370616 Gene

Paralogs for LOC105370616 Gene

No data available for Paralogs for LOC105370616 Gene

Variants for LOC105370616 Gene

Additional dbSNP identifiers (rs#s) for LOC105370616 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370616 Gene

Disorders for LOC105370616 Gene

No disorders were found for LOC105370616 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370616 Gene

Publications for LOC105370616 Gene

No publications were found for LOC105370616 Gene.

No data available for Mastermind for LOC105370616 Gene

Products for LOC105370616 Gene

Sources for LOC105370616 Gene