Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105370401 Gene

Subcategory (RNA class) for LOC105370401 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105370401 Gene

  • Uncharacterized LOC105370401 3

External Ids for LOC105370401 Gene

Previous GeneCards Identifiers for LOC105370401 Gene

  • GC14U901728

Summaries for LOC105370401 Gene

GeneCards Summary for LOC105370401 Gene

LOC105370401 (Uncharacterized LOC105370401) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105370401 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105370401 Gene

Genomics for LOC105370401 Gene

GeneHancer (GH) Regulatory Elements for LOC105370401 Gene

Promoters and enhancers for LOC105370401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J022472 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -37.4 -37386 99 SP1 ZNF652 CC2D1A CTCF ELF3 MNT CBFA2T2 ZNF148 NKRF MLLT1 TRAJ21 TRAJ22 TRAJ23 NGDN MMP14 ACIN1 PRMT5 ABHD4 PRMT5-AS1 DAD1
GH14J022454 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 +25.9 25875 7.2 ZNF687 MLLT1 ZNF639 SMARCA4 IKZF1 DPF2 IKZF2 REST TRIM22 LEF1 TRDJ3 PRMT5-AS1 TRDJ4 TRDJ2 ENSG00000251002 LOC105370401 TRD TRA
GH14J022468 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +14.9 14906 2.6 REST PKNOX1 USF1 TRDV3 ABHD4 TRAJ61 LOC105370401 ENSG00000251002 TRA
GH14J022463 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +18.8 18773 4.6 SP1 ZNF652 ZNF687 JUND CREM MLLT1 ZBED1 IKZF1 BACH1 IKZF2 METTL3 ACIN1 PABPN1 PRMT5 ENSG00000258458 MMP14 TRDV3 TRDC LOC105370401 ENSG00000251002
GH14J022471 Enhancer 1 ENCODE dbSUPER 0.4 +12.9 12949 0.2 SP1 CTCF NKRF ZNF687 RAD21 IKZF1 IKZF2 ZIC2 REST LARP7 TRDV3 TRAJ61 ENSG00000251002 LOC105370401 TRA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370401 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370401 Gene

Genomic Locations for LOC105370401 Gene
chr14:22,461,268-22,484,675
(GRCh38/hg38)
Size:
23,408 bases
Orientation:
Minus strand

Genomic View for LOC105370401 Gene

Genes around LOC105370401 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370401 Gene

Proteins for LOC105370401 Gene

Post-translational modifications for LOC105370401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370401 Gene

Domains & Families for LOC105370401 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105370401 Gene

Function for LOC105370401 Gene

Phenotypes From GWAS Catalog for LOC105370401 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370401 Gene

Localization for LOC105370401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370401 Gene

Pathways & Interactions for LOC105370401 Gene

PathCards logo

SuperPathways for LOC105370401 Gene

No Data Available

Interacting Proteins for LOC105370401 Gene

Gene Ontology (GO) - Biological Process for LOC105370401 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105370401 Gene

Drugs & Compounds for LOC105370401 Gene

No Compound Related Data Available

Transcripts for LOC105370401 Gene

mRNA/cDNA for LOC105370401 Gene

(4) Additional mRNA sequences :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370401 Gene

No ASD Table

Relevant External Links for LOC105370401 Gene

GeneLoc Exon Structure for
LOC105370401

Expression for LOC105370401 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370401 Gene

Orthologs for LOC105370401 Gene

No data available for Orthologs and Evolution for LOC105370401 Gene

Paralogs for LOC105370401 Gene

No data available for Paralogs for LOC105370401 Gene

Variants for LOC105370401 Gene

Sequence variations from dbSNP and Humsavar for LOC105370401 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000039883 -- 22,396,144(-) C/G genic_downstream_transcript_variant, intron_variant
rs1000100552 -- 22,434,554(-) A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000113058 -- 22,402,825(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000142772 -- 22,481,622(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000166738 -- 22,433,295(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370401 Gene

Disorders for LOC105370401 Gene

No disorders were found for LOC105370401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370401 Gene

Publications for LOC105370401 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC105370401 Gene

Products for LOC105370401 Gene

Sources for LOC105370401 Gene

Content
Loading form....