Aliases for LOC105370027 Gene

Subcategory (RNA class) for LOC105370027 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105370027 Gene

  • Uncharacterized LOC105370027 3

External Ids for LOC105370027 Gene

Previous GeneCards Identifiers for LOC105370027 Gene

  • GC12U902468

Summaries for LOC105370027 Gene

GeneCards Summary for LOC105370027 Gene

LOC105370027 (Uncharacterized LOC105370027) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105370027 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105370027 Gene

Genomics for LOC105370027 Gene

GeneHancer (GH) Regulatory Elements for LOC105370027 Gene

Promoters and enhancers for LOC105370027 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J119665 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -2.3 -2340 10 SP1 ZBTB40 CTCF MLX RBPJ SMARCE1 POLR2A NR2F6 CREB1 HCFC1 PRKAB1 piR-57461-054 GCN1 RPLP0 RAB35 CABP1 LINC02440 CIT ENSG00000256008 SRRM4
GH12J119664 Enhancer 0.6 ENCODE dbSUPER 0.6 +3.1 3135 0.1 RXRA SP1 HNF4A MAX ENSG00000248636 LOC105370027 PRKAB1 RN7SKP197 lnc-CIT-7
GH12J119659 Enhancer 0.8 Ensembl ENCODE 0.4 +7.9 7906 1.8 CTCF RAD21 ZNF652 PRDM1 SMARCA4 CREM REST TRIM22 ZNF143 PKNOX1 PRKAB1 ENSG00000248636 LOC105370027 lnc-CIT-7 RN7SKP197
GH12J119662 Enhancer 0.6 dbSUPER 0.4 +5.3 5345 0.7 L3MBTL2 DPF2 CAVIN1 HDAC1 CTBP1 EHMT2 TRIM24 MNT FOXK2 ZNF592 PRKAB1 ENSG00000248636 LOC105370027 RN7SKP197 lnc-CIT-7
GH12J119593 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.2 +72.9 72902 3.8 PRDM10 EZH2 SCRT2 NR2F2 ZNF398 EGR1 PRKAB1 ENSG00000248636 TMEM233 piR-36588-110 LOC105370027
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370027 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105370027 Gene

Genomic Locations for LOC105370027 Gene
chr12:119,387,991-119,668,006
(GRCh38/hg38)
Size:
280,016 bases
Orientation:
Minus strand

Genomic View for LOC105370027 Gene

Genes around LOC105370027 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105370027 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370027 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370027 Gene

Proteins for LOC105370027 Gene

Post-translational modifications for LOC105370027 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370027 Gene

Domains & Families for LOC105370027 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105370027 Gene

Function for LOC105370027 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370027 Gene

Localization for LOC105370027 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370027 Gene

Pathways & Interactions for LOC105370027 Gene

PathCards logo

SuperPathways for LOC105370027 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105370027 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105370027 Gene

Drugs & Compounds for LOC105370027 Gene

No Compound Related Data Available

Transcripts for LOC105370027 Gene

mRNA/cDNA for LOC105370027 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370027 Gene

No ASD Table

Relevant External Links for LOC105370027 Gene

GeneLoc Exon Structure for
LOC105370027

Expression for LOC105370027 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370027 Gene

Orthologs for LOC105370027 Gene

No data available for Orthologs and Evolution for LOC105370027 Gene

Paralogs for LOC105370027 Gene

No data available for Paralogs for LOC105370027 Gene

Variants for LOC105370027 Gene

Sequence variations from dbSNP and Humsavar for LOC105370027 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000005053 -- 119,393,763(-) G/A intron_variant
rs1000013209 -- 119,541,448(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000018659 -- 119,400,709(-) C/T intron_variant
rs1000034361 -- 119,565,754(-) C/G/T genic_upstream_transcript_variant, intron_variant
rs1000045172 -- 119,661,845(-) T/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370027 Gene

Disorders for LOC105370027 Gene

No disorders were found for LOC105370027 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370027 Gene

Publications for LOC105370027 Gene

No publications were found for LOC105370027 Gene.

No data available for External Links for LOC105370027 Gene

Products for LOC105370027 Gene

Sources for LOC105370027 Gene