Aliases for LOC105370024 Gene

Subcategory (RNA class) for LOC105370024 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105370024 Gene

  • Uncharacterized LOC105370024 3
  • Novel Transcript 5
  • NONHSAG012476.2 91
  • HSALNG0094461 164
  • AC084880.4 5
  • Lnc-CIT-5 165

External Ids for LOC105370024 Gene

Previous GeneCards Identifiers for LOC105370024 Gene

  • GC12U902065

Summaries for LOC105370024 Gene

GeneCards Summary for LOC105370024 Gene

LOC105370024 (Uncharacterized LOC105370024) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105370024 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105370024 Gene

Genomics for LOC105370024 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105370024 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J119302 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 10.3 -125.3 -125264 1.2 ZNF512 USF2 EZH2 USF1 POLR2A ZNF384 RCOR1 RAD51 FOS SMARCA4 LINC00934 LOC105370024 lnc-CIT-9 CCDC60 HSPB8
GH12J119235 Enhancer 0.6 Ensembl ENCODE 11.1 -58.5 -58548 2.6 CTCF TEAD4 TEAD1 ZNF189 TEAD3 TEAD2 ENSG00000256311 HSPB8 LOC105370024 LOC105370025 NONHSAG012479.2 CCDC60
GH12J119245 Enhancer 0.6 Ensembl 10.7 -68.5 -68547 0.6 GATAD2A SP1 TOE1 CEBPA SOX13 USF1 ATF3 JUND ATF4 HNF4A HSPB8 LOC105370024 ENSG00000257095 SRRM4 LOC105370025 ENSG00000256311 NONHSAG012479.2 CCDC60
GH12J119145 Enhancer 0.6 Ensembl ENCODE 12.1 +32.4 32352 1.6 YY1 CBX8 EZH2 LOC112268101 LOC105370024 HSPB8 ENSG00000257095 SRRM4 lnc-CIT-11 piR-61532-081
GH12J119423 Enhancer 0.6 Ensembl 10.2 -246.0 -245989 0.5 SIX5 ZNF143 POLR2A YY1 HCFC1 ELF1 ETS1 SUZ12 THAP11 TBP HSPB8 LOC105370024 piR-50133-002 lnc-CIT-8 CCDC60 NONHSAG012483.2 TMEM233 ENSG00000248636 LOC105370027
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105370024 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105370024 Gene

Genomic Locations for LOC105370024 Gene
chr12:119,174,065-119,177,553
(GRCh38/hg38)
Size:
3,489 bases
Orientation:
Minus strand
chr12:119,611,870-119,614,289
(GRCh37/hg19)
Size:
2,420 bases
Orientation:
Minus strand

Genomic View for LOC105370024 Gene

Genes around LOC105370024 on UCSC Golden Path with GeneCards custom track
LOC105370024 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105370024 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105370024 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105370024 Gene

Proteins for LOC105370024 Gene

Post-translational modifications for LOC105370024 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105370024 Gene

Domains & Families for LOC105370024 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105370024 Gene

Function for LOC105370024 Gene

Phenotypes From GWAS Catalog for LOC105370024 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105370024 Gene

Localization for LOC105370024 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105370024 Gene

Pathways & Interactions for LOC105370024 Gene

PathCards logo

SuperPathways for LOC105370024 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105370024 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105370024 Gene

Drugs & Compounds for LOC105370024 Gene

No Compound Related Data Available

Transcripts for LOC105370024 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105370024 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C694A_9606 lncRNA 577 4

Ensembl: ENST00000538405 (view in UCSC) ,

LncBook: HSALNT0195834,

LNCipedia: lnc-CIT-5:1,

NONCODE: NONHSAT031070.2,

URS0000A76923_9606 lncRNA 576 1

RefSeq: NR_134996,

URS00009C5CBF_9606 lncRNA 629 2

LncBook: HSALNT0195835,

NONCODE: NONHSAT164085.1,

LOC105370024 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105370024 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105370024 Gene

No ASD Table

Relevant External Links for LOC105370024 Gene

GeneLoc Exon Structure for
LOC105370024

Expression for LOC105370024 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105370024 Gene

Orthologs for LOC105370024 Gene

Evolution for LOC105370024 Gene

ENSEMBL:
Gene Tree for LOC105370024 (if available)
TreeFam:
Gene Tree for LOC105370024 (if available)

No data available for Orthologs for LOC105370024 Gene

Paralogs for LOC105370024 Gene

No data available for Paralogs for LOC105370024 Gene

Variants for LOC105370024 Gene

Additional dbSNP identifiers (rs#s) for LOC105370024 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105370024 Gene

Disorders for LOC105370024 Gene

No disorders were found for LOC105370024 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105370024 Gene

Publications for LOC105370024 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC105370024 Gene

Products for LOC105370024 Gene

Sources for LOC105370024 Gene