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Aliases for LOC105369989 Gene

Subcategory (RNA class) for LOC105369989 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369989 Gene

  • Uncharacterized LOC105369989 3

External Ids for LOC105369989 Gene

Previous GeneCards Identifiers for LOC105369989 Gene

  • GC12U902092

Summaries for LOC105369989 Gene

GeneCards Summary for LOC105369989 Gene

LOC105369989 (Uncharacterized LOC105369989) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369989 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369989 Gene

Genomics for LOC105369989 Gene

GeneHancer (GH) Regulatory Elements for LOC105369989 Gene

Promoters and enhancers for LOC105369989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J113356 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 600.7 +1.8 1767 4.6 ZNF652 SP1 ZFX CTCF ELF3 MNT CBFA2T2 NKRF POLR2A ZNF384 PLBD2 SLC8B1 LOC105369989 RBM19 DDX54 SDSL RITA1 ENSG00000201208 RPL6 SDS
GH12J113403 Promoter/Enhancer 1.2 Ensembl ENCODE 0.3 -43.4 -43438 1 MAFK SP1 SMARCA4 RXRA IKZF1 PHF21A HDAC1 ZNF341 ZNF316 NFE2 SDSL PLBD2 LHX5 SDS LOC105369989
GH12J113417 Enhancer 1.1 FANTOM5 ENCODE 0.2 -57.8 -57750 1 CEBPG SP1 HNF1A RXRA CEBPA RXRB ATF7 RCOR2 FOXA2 MBD1 SDSL PLBD2 SLC8B1 SDS OAS2 OAS3 LOC105369989
GH12J113393 Enhancer 0.8 ENCODE 0.3 -32.5 -32548 0.2 SP1 SP5 KLF14 PKNOX1 POLR2A FOXA2 DEAF1 NRF1 ZNF316 KLF9 SDSL LOC105369989 SDS
GH12J113404 Promoter 0.8 Ensembl 0.3 -42.2 -42238 1 HDAC2 BCOR ADNP KDM1A ZBTB33 ZMYM3 SMARCA5 SDSL SDS LOC105369989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369989 Gene

Genomic Locations for LOC105369989 Gene
chr12:113,353,457-113,360,663
(GRCh38/hg38)
Size:
7,207 bases
Orientation:
Minus strand

Genomic View for LOC105369989 Gene

Genes around LOC105369989 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369989 Gene

Proteins for LOC105369989 Gene

Post-translational modifications for LOC105369989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369989 Gene

Domains & Families for LOC105369989 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369989 Gene

Function for LOC105369989 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369989 Gene

Localization for LOC105369989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369989 Gene

Pathways & Interactions for LOC105369989 Gene

PathCards logo

SuperPathways for LOC105369989 Gene

No Data Available

Interacting Proteins for LOC105369989 Gene

Gene Ontology (GO) - Biological Process for LOC105369989 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369989 Gene

Drugs & Compounds for LOC105369989 Gene

No Compound Related Data Available

Transcripts for LOC105369989 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369989 Gene

No ASD Table

Relevant External Links for LOC105369989 Gene

GeneLoc Exon Structure for
LOC105369989

No data available for mRNA/cDNA for LOC105369989 Gene

Expression for LOC105369989 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369989 Gene

Orthologs for LOC105369989 Gene

No data available for Orthologs and Evolution for LOC105369989 Gene

Paralogs for LOC105369989 Gene

No data available for Paralogs for LOC105369989 Gene

Variants for LOC105369989 Gene

Sequence variations from dbSNP and Humsavar for LOC105369989 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000024609 -- 113,353,399(-) T/C downstream_transcript_variant
rs1001044295 -- 113,359,844(-) A/G upstream_transcript_variant
rs1001484016 -- 113,352,990(-) T/C downstream_transcript_variant
rs1001872062 -- 113,359,041(-) C/T intron_variant
rs1002475159 -- 113,357,910(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369989 Gene

Disorders for LOC105369989 Gene

No disorders were found for LOC105369989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369989 Gene

Publications for LOC105369989 Gene

No publications were found for LOC105369989 Gene.

No data available for External Links for LOC105369989 Gene

Products for LOC105369989 Gene

Sources for LOC105369989 Gene

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