Aliases for LOC105369980 Gene

Subcategory (RNA class) for LOC105369980 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105369980 Gene

  • Uncharacterized LOC105369980 3
  • Novel Transcript 5
  • NONHSAG012297.2 91
  • NONHSAG012296.2 91
  • HSALNG0094021 164
  • AC002351.1 5
  • Lnc-MYL2-1 165

External Ids for LOC105369980 Gene

Previous GeneCards Identifiers for LOC105369980 Gene

  • GC12U902291
  • GC12M110952
  • GC12M110953
  • GC12M110961

Summaries for LOC105369980 Gene

GeneCards Summary for LOC105369980 Gene

LOC105369980 (Uncharacterized LOC105369980) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369980 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369980 Gene

Genomics for LOC105369980 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369980 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J110965 Enhancer 0.5 Ensembl 0.4 -8.5 -8456 1.1 TOE1 RAD51 USF1 POLR2A SMARCA4 USF2 CBFA2T2 MYL2 RF00017-1269 LOC105369980 CUX2
GH12J110948 Enhancer 0.5 ENCODE 0.4 +9.6 9568 0.2 FOXA1 CTBP1 CUX1 GATA3 DPF2 JUND SMARCE1 piR-59316-017 LINC01405 MYL2 LOC105369980 CUX2
GH12J110947 Enhancer 0.5 ENCODE 0.4 +10.0 10043 0.8 CREB1 FOXA1 CTBP1 GATA3 DPF2 JUND SMARCE1 LINC01405 MYL2 piR-59316-017 LOC105369980 CUX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369980 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369980 Gene

Genomic Locations for LOC105369980 Gene
chr12:110,942,940-110,957,820
(GRCh38/hg38)
Size:
14,881 bases
Orientation:
Minus strand
chr12:111,389,487-111,395,616
(GRCh37/hg19)
Size:
6,130 bases
Orientation:
Minus strand

Genomic View for LOC105369980 Gene

Genes around LOC105369980 on UCSC Golden Path with GeneCards custom track
LOC105369980 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105369980 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369980 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369980 Gene

Proteins for LOC105369980 Gene

Post-translational modifications for LOC105369980 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369980 Gene

Domains & Families for LOC105369980 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369980 Gene

Function for LOC105369980 Gene

Phenotypes From GWAS Catalog for LOC105369980 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369980 Gene

Localization for LOC105369980 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369980 Gene

Pathways & Interactions for LOC105369980 Gene

PathCards logo

SuperPathways for LOC105369980 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369980 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369980 Gene

Drugs & Compounds for LOC105369980 Gene

No Compound Related Data Available

Transcripts for LOC105369980 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369980 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000158EC4_9606 lncRNA 590 3

Ensembl: ENST00000546852 (view in UCSC) ,

LNCipedia: lnc-MYL2-1:1,

NONCODE: NONHSAT030716.2,

URS0000236083_9606 lncRNA 565 3

Ensembl: ENST00000548329 (view in UCSC) ,

LNCipedia: lnc-MYL2-1:2,

NONCODE: NONHSAT030717.2,

URS0000A775FA_9606 lncRNA 600 2

RefSeq: NR_135001,

LNCipedia: lnc-MYL2-1:8,

URS0000A76DC2_9606 lncRNA 596 2

RefSeq: NR_135002,

LNCipedia: lnc-MYL2-1:9,

URS0000EF28D3_9606 lncRNA 2158 1

Ensembl: ENST00000654505 (view in UCSC) ,

LOC105369980 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105369980 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369980 Gene

No ASD Table

Relevant External Links for LOC105369980 Gene

GeneLoc Exon Structure for
LOC105369980

Expression for LOC105369980 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369980 Gene

Orthologs for LOC105369980 Gene

Evolution for LOC105369980 Gene

ENSEMBL:
Gene Tree for LOC105369980 (if available)
TreeFam:
Gene Tree for LOC105369980 (if available)

No data available for Orthologs for LOC105369980 Gene

Paralogs for LOC105369980 Gene

No data available for Paralogs for LOC105369980 Gene

Variants for LOC105369980 Gene

Additional dbSNP identifiers (rs#s) for LOC105369980 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369980 Gene

Disorders for LOC105369980 Gene

Additional Disease Information for LOC105369980

No disorders were found for LOC105369980 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105369980 Gene

Publications for LOC105369980 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC105369980 Gene

Products for LOC105369980 Gene

Sources for LOC105369980 Gene