LOC105369892 Gene (RNA Gene)

Uncharacterized LOC105369892

GC12P090253
GIFtS:
3

Aliases for LOC105369892 Gene

Subcategory (RNA class) for LOC105369892 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369892 Gene

  • Uncharacterized LOC105369892 3

External Ids for LOC105369892 Gene

Previous GeneCards Identifiers for LOC105369892 Gene

  • GC12U902508

Summaries for LOC105369892 Gene

GeneCards Summary for LOC105369892 Gene

LOC105369892 (Uncharacterized LOC105369892) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369892 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369892 Gene

Genomics for LOC105369892 Gene

GeneHancer (GH) Regulatory Elements for LOC105369892 Gene

Promoters and enhancers for LOC105369892 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J090252 Enhancer 0.9 Ensembl ENCODE 750.6 -0.1 -95 2.5 SP1 MYC ETV6 MAX RAD21 CTCF CREM IKZF1 IKZF2 CBFB LOC105369892 lnc-ATP2B1-4
GH12J090251 Enhancer 0.2 Ensembl 750.6 -1.8 -1824 0.8 LOC105369892 lnc-ATP2B1-4 lnc-ATP2B1-3
GH12J090280 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +26.8 26776 1.2 ETV6 RELA CREM ZBED1 IKZF1 IKZF2 ZNF143 PKNOX1 CBFB DPF2 LINC02392 LOC105369892
GH12J090260 Enhancer 0.6 Ensembl ENCODE 0.4 +7.9 7911 3.3 POLR2A SP1 FOSL2 LINC02392 LOC105369892
GH12J090277 Enhancer 0.2 Ensembl 0.3 +23.7 23676 0.2 LINC02392 LOC105369892
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369892 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369892 Gene

Genomic Locations for LOC105369892 Gene
chr12:90,253,825-90,263,894
(GRCh38/hg38)
Size:
10,070 bases
Orientation:
Plus strand

Genomic View for LOC105369892 Gene

Genes around LOC105369892 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369892 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369892 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105369892 Gene

Proteins for LOC105369892 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105369892 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369892 Gene

Domains & Families for LOC105369892 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369892 Gene

Function for LOC105369892 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369892 Gene

Localization for LOC105369892 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369892 Gene

Pathways & Interactions for LOC105369892 Gene

PathCards logo

SuperPathways for LOC105369892 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369892 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369892 Gene

Drugs & Compounds for LOC105369892 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105369892 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369892 Gene

No ASD Table

Relevant External Links for LOC105369892 Gene

GeneLoc Exon Structure for
LOC105369892

No data available for mRNA/cDNA for LOC105369892 Gene

Expression for LOC105369892 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369892 Gene

Orthologs for LOC105369892 Gene

No data available for Orthologs and Evolution for LOC105369892 Gene

Paralogs for LOC105369892 Gene

No data available for Paralogs for LOC105369892 Gene

Variants for LOC105369892 Gene

Sequence variations from dbSNP and Humsavar for LOC105369892 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000295349 -- 90,254,830(+) C/A/G intron_variant
rs1000478813 -- 90,257,007(+) G/A intron_variant
rs1000489742 -- 90,261,315(+) T/C intron_variant
rs1000531865 -- 90,253,419(+) TTAAATTTA/TTA upstream_transcript_variant
rs1000604859 -- 90,255,079(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369892 Gene

Disorders for LOC105369892 Gene

No disorders were found for LOC105369892 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369892 Gene

Publications for LOC105369892 Gene

No publications were found for LOC105369892 Gene.

No data available for External Links for LOC105369892 Gene

Products for LOC105369892 Gene

Sources for LOC105369892 Gene