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Aliases for LOC105369890 Gene

Subcategory (RNA class) for LOC105369890 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369890 Gene

  • Uncharacterized LOC105369890 3

External Ids for LOC105369890 Gene

Previous GeneCards Identifiers for LOC105369890 Gene

  • GC12U902052

Summaries for LOC105369890 Gene

GeneCards Summary for LOC105369890 Gene

LOC105369890 (Uncharacterized LOC105369890) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369890 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369890 Gene

Genomics for LOC105369890 Gene

GeneHancer (GH) Regulatory Elements for LOC105369890 Gene

Promoters and enhancers for LOC105369890 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J089917 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 -0.4 -438 2 CTBP1 ZFX CTCF MGA ZNF217 DPF2 NFIB GATA3 ELF1 RFX5 LOC105369890 BRWD1P2 RNU6-148P ENSG00000258216
GH12J089920 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.3 1279 0.2 BRWD1P2 LOC105369890 LINC02399 ENSG00000258216
GH12J089942 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +28.1 28069 9.6 ZNF384 CTCF SP7 RELA CREM PRDM1 ZNF404 MZF1 RAD21 ZNF680 LINC02399 ATP2B1 ENSG00000258302 POC1B ATP2B1-AS1 LOC105369890 BRWD1P2 ENSG00000258216
GH12J089926 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +8.6 8631 3.2 SP1 NKRF ZNF121 ZNF687 RELA CREM MLLT1 IKZF1 BACH1 IKZF2 ATP2B1 POC1B LOC105369890 BRWD1P2 LINC02399 ENSG00000258216
GH12J089878 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -38.5 -38464 5.3 SP1 ZNF687 MAFK RELA CREM MLLT1 RAD21 ZBED1 IKZF1 POLR2A POC1B ATP2B1 LOC105369890 RNU6-148P ENSG00000258216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369890 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369890 Gene

Genomic Locations for LOC105369890 Gene
chr12:89,919,422-90,112,278
(GRCh38/hg38)
Size:
192,857 bases
Orientation:
Plus strand

Genomic View for LOC105369890 Gene

Genes around LOC105369890 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369890 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369890 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369890 Gene

Proteins for LOC105369890 Gene

Post-translational modifications for LOC105369890 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369890 Gene

Domains & Families for LOC105369890 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369890 Gene

Function for LOC105369890 Gene

Phenotypes From GWAS Catalog for LOC105369890 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369890 Gene

Localization for LOC105369890 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369890 Gene

Pathways & Interactions for LOC105369890 Gene

PathCards logo

SuperPathways for LOC105369890 Gene

No Data Available

Interacting Proteins for LOC105369890 Gene

Gene Ontology (GO) - Biological Process for LOC105369890 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369890 Gene

Drugs & Compounds for LOC105369890 Gene

No Compound Related Data Available

Transcripts for LOC105369890 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369890 Gene

No ASD Table

Relevant External Links for LOC105369890 Gene

GeneLoc Exon Structure for
LOC105369890

No data available for mRNA/cDNA for LOC105369890 Gene

Expression for LOC105369890 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369890 Gene

Orthologs for LOC105369890 Gene

No data available for Orthologs and Evolution for LOC105369890 Gene

Paralogs for LOC105369890 Gene

No data available for Paralogs for LOC105369890 Gene

Variants for LOC105369890 Gene

Sequence variations from dbSNP and Humsavar for LOC105369890 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000057183 -- 90,053,991(+) A/C intron_variant
rs1000057412 -- 90,043,282(+) A/G intron_variant
rs1000060377 -- 89,951,037(+) T/A/C intron_variant
rs1000074018 -- 90,049,256(+) C/T intron_variant
rs1000108011 -- 89,979,353(+) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369890 Gene

Disorders for LOC105369890 Gene

No disorders were found for LOC105369890 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369890 Gene

Publications for LOC105369890 Gene

No publications were found for LOC105369890 Gene.

No data available for External Links for LOC105369890 Gene

Products for LOC105369890 Gene

Sources for LOC105369890 Gene

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