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Aliases for LOC105369880 Gene

Subcategory (RNA class) for LOC105369880 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369880 Gene

  • Uncharacterized LOC105369880 3

External Ids for LOC105369880 Gene

Previous GeneCards Identifiers for LOC105369880 Gene

  • GC12U901981

Summaries for LOC105369880 Gene

GeneCards Summary for LOC105369880 Gene

LOC105369880 (Uncharacterized LOC105369880) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369880 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369880 Gene

Genomics for LOC105369880 Gene

GeneHancer (GH) Regulatory Elements for LOC105369880 Gene

Promoters and enhancers for LOC105369880 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J087427 Enhancer 0.9 FANTOM5 Ensembl ENCODE 600.7 -0.8 -751 2.4 POLR2A NFYB NFIB FOXA1 JUND LOC105369880 LOC105369879
GH12J087439 Enhancer 1 Ensembl ENCODE 0.4 +11.2 11216 2.5 NCOA3 MAFK FOSL2 CREB1 CEBPG POLR2A TARDBP CTBP1 CEBPB JUN LOC105369880 GC12M087515
GH12J087384 Enhancer 0.7 Ensembl ENCODE 0.3 -45.0 -44952 2 TCF7L2 PKNOX1 DPF2 SMARCE1 LOC105369880 LOC105369879
GH12J087424 Enhancer 0.2 FANTOM5 0.7 -4.3 -4269 0.4 LOC105369880 LOC105369879
GH12J087509 Enhancer 0.7 Ensembl ENCODE 0.2 +80.6 80649 0.8 ELF1 FOSL2 JUN SP1 JUND PKNOX1 FOS GC12M087515 LOC105369880
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369880 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369880 Gene

Genomic Locations for LOC105369880 Gene
chr12:87,429,152-87,440,513
(GRCh38/hg38)
Size:
11,362 bases
Orientation:
Plus strand

Genomic View for LOC105369880 Gene

Genes around LOC105369880 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369880 Gene

Proteins for LOC105369880 Gene

Post-translational modifications for LOC105369880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369880 Gene

Domains & Families for LOC105369880 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369880 Gene

Function for LOC105369880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369880 Gene

Localization for LOC105369880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369880 Gene

Pathways & Interactions for LOC105369880 Gene

PathCards logo

SuperPathways for LOC105369880 Gene

No Data Available

Interacting Proteins for LOC105369880 Gene

Gene Ontology (GO) - Biological Process for LOC105369880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369880 Gene

Drugs & Compounds for LOC105369880 Gene

No Compound Related Data Available

Transcripts for LOC105369880 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369880 Gene

No ASD Table

Relevant External Links for LOC105369880 Gene

GeneLoc Exon Structure for
LOC105369880

No data available for mRNA/cDNA for LOC105369880 Gene

Expression for LOC105369880 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369880 Gene

Orthologs for LOC105369880 Gene

No data available for Orthologs and Evolution for LOC105369880 Gene

Paralogs for LOC105369880 Gene

No data available for Paralogs for LOC105369880 Gene

Variants for LOC105369880 Gene

Sequence variations from dbSNP and Humsavar for LOC105369880 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000533749 -- 87,437,928(+) C/T intron_variant
rs1000887148 -- 87,429,357(+) T/C non_coding_transcript_variant
rs1001045059 -- 87,434,891(+) C/T intron_variant
rs1001175498 -- 87,429,415(+) C/T non_coding_transcript_variant
rs1001203732 -- 87,435,310(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369880 Gene

Disorders for LOC105369880 Gene

No disorders were found for LOC105369880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369880 Gene

Publications for LOC105369880 Gene

No publications were found for LOC105369880 Gene.

No data available for External Links for LOC105369880 Gene

Products for LOC105369880 Gene

Sources for LOC105369880 Gene

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