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Aliases for LOC105369831 Gene

Subcategory (RNA class) for LOC105369831 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369831 Gene

  • Uncharacterized LOC105369831 3

External Ids for LOC105369831 Gene

Previous GeneCards Identifiers for LOC105369831 Gene

  • GC12U902194

Summaries for LOC105369831 Gene

GeneCards Summary for LOC105369831 Gene

LOC105369831 (Uncharacterized LOC105369831) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369831 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369831 Gene

Genomics for LOC105369831 Gene

GeneHancer (GH) Regulatory Elements for LOC105369831 Gene

Promoters and enhancers for LOC105369831 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J071216 Enhancer 0.6 ENCODE 600.7 -0.1 -117 1.3 CTCF RAD21 ARID2 REST SMC3 GATA3 ZNF654 ZNF660 TEAD4 LOC105369831 ENSG00000258053 TSPAN8
GH12J071218 Enhancer 0.3 ENCODE 600.7 +1.9 1871 0.6 POLR2A LOC105369831 LOC105369832 TSPAN8
GH12J071152 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 -57.9 -57942 13.3 ELF3 CEBPG RERE ZNF24 SP1 HNF1A PPARG ZNF384 ZNF644 CREB1 TSPAN8 ENSG00000258053 LOC105369831
GH12J071235 Enhancer 1.1 Ensembl ENCODE 0.4 +19.8 19779 2 CC2D1A CBFA2T2 ZNF148 MLLT1 GTF2F1 TRIM24 EGR1 SMARCA4 MTA1 DPF2 LOC105369831 LOC105369832 TSPAN8
GH12J071213 Enhancer 0.5 ENCODE 0.7 -2.2 -2236 2.3 ZNF652 SP1 ELF3 SAP130 NANOG ETV5 POU5F1 LOC105369831 ENSG00000258053 TSPAN8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369831 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369831 Gene

Genomic Locations for LOC105369831 Gene
chr12:71,217,023-71,220,821
(GRCh38/hg38)
Size:
3,799 bases
Orientation:
Plus strand

Genomic View for LOC105369831 Gene

Genes around LOC105369831 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369831 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369831 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369831 Gene

Proteins for LOC105369831 Gene

Post-translational modifications for LOC105369831 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369831 Gene

Domains & Families for LOC105369831 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369831 Gene

Function for LOC105369831 Gene

Phenotypes From GWAS Catalog for LOC105369831 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369831 Gene

Localization for LOC105369831 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369831 Gene

Pathways & Interactions for LOC105369831 Gene

PathCards logo

SuperPathways for LOC105369831 Gene

No Data Available

Interacting Proteins for LOC105369831 Gene

Gene Ontology (GO) - Biological Process for LOC105369831 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369831 Gene

Drugs & Compounds for LOC105369831 Gene

No Compound Related Data Available

Transcripts for LOC105369831 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369831 Gene

No ASD Table

Relevant External Links for LOC105369831 Gene

GeneLoc Exon Structure for
LOC105369831

No data available for mRNA/cDNA for LOC105369831 Gene

Expression for LOC105369831 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369831 Gene

Orthologs for LOC105369831 Gene

No data available for Orthologs and Evolution for LOC105369831 Gene

Paralogs for LOC105369831 Gene

No data available for Paralogs for LOC105369831 Gene

Variants for LOC105369831 Gene

Sequence variations from dbSNP and Humsavar for LOC105369831 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000210987 -- 71,215,057(+) T/C upstream_transcript_variant
rs1000512670 -- 71,217,065(+) G/C non_coding_transcript_variant
rs1000545279 -- 71,216,621(+) T/C upstream_transcript_variant
rs1001709079 -- 71,217,407(+) T/C intron_variant
rs1002010049 -- 71,216,363(+) T/A/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369831 Gene

Disorders for LOC105369831 Gene

No disorders were found for LOC105369831 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369831 Gene

Publications for LOC105369831 Gene

No publications were found for LOC105369831 Gene.

No data available for External Links for LOC105369831 Gene

Products for LOC105369831 Gene

Sources for LOC105369831 Gene

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