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Aliases for LOC105369828 Gene

Subcategory (RNA class) for LOC105369828 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369828 Gene

  • Uncharacterized LOC105369828 3

External Ids for LOC105369828 Gene

Previous GeneCards Identifiers for LOC105369828 Gene

  • GC12U902165

Summaries for LOC105369828 Gene

GeneCards Summary for LOC105369828 Gene

LOC105369828 (Uncharacterized LOC105369828) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369828 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369828 Gene

Genomics for LOC105369828 Gene

GeneHancer (GH) Regulatory Elements for LOC105369828 Gene

Promoters and enhancers for LOC105369828 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J070536 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +14.6 14581 2.2 SP1 SOX13 FOXA2 NR2F2 ZFP64 SOX5 KCNMB4 ENSG00000258168 LOC105369828 ENSG00000277247 PTPRB
GH12J070543 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +22.1 22110 1.1 SMARCC1 CEBPB CHD2 JUN RCOR1 JUND MAX DEK FOS EP300 KCNMB4 LOC105369828 ENSG00000277247 PTPRB
GH12J070506 Enhancer 0.7 Ensembl 0.4 -14.0 -14019 1.8 MAFK SMARCA4 HDAC1 ZNF316 SOX6 NFE2 MAFG FOSL1 NR2F1 DPF2 ENSG00000258168 PIR44773 LOC105369828 LOC105369827
GH12J070560 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +39.3 39277 1 FOS ZMYM3 JUND KCNMB4 ENSG00000277247 LOC105369828 PTPRB
GH12J070549 Enhancer 0.6 dbSUPER 0.3 +28.5 28540 1.8 ZNF652 CEBPA SOX13 FOXA2 FOXP1 JUN FOXA3 EGR2 CBFA2T3 KCNMB4 ENSG00000277247 LOC105369828 PTPRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369828 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369828 Gene

Genomic Locations for LOC105369828 Gene
chr12:70,521,520-70,571,019
(GRCh38/hg38)
Size:
49,500 bases
Orientation:
Plus strand

Genomic View for LOC105369828 Gene

Genes around LOC105369828 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369828 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369828 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369828 Gene

Proteins for LOC105369828 Gene

Post-translational modifications for LOC105369828 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369828 Gene

Domains & Families for LOC105369828 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369828 Gene

Function for LOC105369828 Gene

Phenotypes From GWAS Catalog for LOC105369828 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369828 Gene

Localization for LOC105369828 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369828 Gene

Pathways & Interactions for LOC105369828 Gene

PathCards logo

SuperPathways for LOC105369828 Gene

No Data Available

Interacting Proteins for LOC105369828 Gene

Gene Ontology (GO) - Biological Process for LOC105369828 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369828 Gene

Drugs & Compounds for LOC105369828 Gene

No Compound Related Data Available

Transcripts for LOC105369828 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369828 Gene

No ASD Table

Relevant External Links for LOC105369828 Gene

GeneLoc Exon Structure for
LOC105369828

No data available for mRNA/cDNA for LOC105369828 Gene

Expression for LOC105369828 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369828 Gene

Orthologs for LOC105369828 Gene

No data available for Orthologs and Evolution for LOC105369828 Gene

Paralogs for LOC105369828 Gene

No data available for Paralogs for LOC105369828 Gene

Variants for LOC105369828 Gene

Sequence variations from dbSNP and Humsavar for LOC105369828 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000050496 -- 70,526,344(+) A/C/G upstream_transcript_variant
rs1000194234 -- 70,552,303(+) G/A intron_variant
rs1000239741 -- 70,552,516(+) AAGAAAGAA/AAGAA intron_variant
rs1000252521 -- 70,558,870(+) T/A intron_variant
rs1000286038 -- 70,562,177(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369828 Gene

Disorders for LOC105369828 Gene

No disorders were found for LOC105369828 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369828 Gene

Publications for LOC105369828 Gene

No publications were found for LOC105369828 Gene.

No data available for External Links for LOC105369828 Gene

Products for LOC105369828 Gene

Sources for LOC105369828 Gene

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