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Aliases for LOC105369777 Gene

Subcategory (RNA class) for LOC105369777 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369777 Gene

  • Uncharacterized LOC105369777 3

External Ids for LOC105369777 Gene

Previous GeneCards Identifiers for LOC105369777 Gene

  • GC12U902191

Summaries for LOC105369777 Gene

GeneCards Summary for LOC105369777 Gene

LOC105369777 (Uncharacterized LOC105369777) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369777 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369777 Gene

Genomics for LOC105369777 Gene

GeneHancer (GH) Regulatory Elements for LOC105369777 Gene

Promoters and enhancers for LOC105369777 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054188 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 -0.3 -297 2 ZFX CC2D1A ELF3 SIX5 ZNF148 NKRF POLR2A TRIM24 ELF1 SP1 SMUG1 LOC105369777 FLJ12825 HOXC8 HOXC-AS1 HOXC6 HOXC9 HOXC-AS2 ENSG00000257605 MIR615
GH12J054187 Enhancer 0.5 ENCODE 600.7 -1.9 -1865 0.2 CTBP1 POLR2A DPF2 FOXA1 SMARCE1 SMUG1 LOC105369777 FLJ12825 GC12M054122
GH12J054191 Enhancer 0.9 ENCODE 0.7 +2.6 2553 0.7 SP1 ZNF652 CC2D1A CTCF ZNF384 SP7 MLLT1 RAD21 ZBTB8A GATAD2A HOXC8 HOXC9 HOXC-AS2 HOXC-AS1 HOXC6 MIR615 ENSG00000248576 HOXC4 HOXC5 MAP3K12
GH12J054195 Enhancer 1.1 FANTOM5 ENCODE 0.4 +7.6 7579 3.1 ZNF121 CDC5L TRIM24 GLIS2 PKNOX1 ZBTB8A BACH1 REST POLR2A KLF7 HOXC8 HOXC-AS1 HOXC-AS2 HOXC6 HOXC9 MIR196A2 MIR615 HOXC5 HOXC4 ENSG00000248576
GH12J054201 Enhancer 0.8 ENCODE 0.4 +12.4 12415 0.2 CTCF SP7 RAD21 IKZF1 ZNF143 REST ZEB2 TRIM22 ZNF692 ZNF341 HOXC8 HOXC9 HOXC-AS2 HOXC-AS1 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 HOXC10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369777 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369777 Gene

Genomic Locations for LOC105369777 Gene
chr12:54,189,097-54,201,845
(GRCh38/hg38)
Size:
12,749 bases
Orientation:
Plus strand

Genomic View for LOC105369777 Gene

Genes around LOC105369777 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369777 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369777 Gene

Proteins for LOC105369777 Gene

Post-translational modifications for LOC105369777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369777 Gene

Domains & Families for LOC105369777 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369777 Gene

Function for LOC105369777 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369777 Gene

Localization for LOC105369777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369777 Gene

Pathways & Interactions for LOC105369777 Gene

PathCards logo

SuperPathways for LOC105369777 Gene

No Data Available

Interacting Proteins for LOC105369777 Gene

Gene Ontology (GO) - Biological Process for LOC105369777 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369777 Gene

Drugs & Compounds for LOC105369777 Gene

No Compound Related Data Available

Transcripts for LOC105369777 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369777 Gene

No ASD Table

Relevant External Links for LOC105369777 Gene

GeneLoc Exon Structure for
LOC105369777

No data available for mRNA/cDNA for LOC105369777 Gene

Expression for LOC105369777 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369777 Gene

Orthologs for LOC105369777 Gene

No data available for Orthologs and Evolution for LOC105369777 Gene

Paralogs for LOC105369777 Gene

No data available for Paralogs for LOC105369777 Gene

Variants for LOC105369777 Gene

Sequence variations from dbSNP and Humsavar for LOC105369777 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000034681 -- 54,188,932(+) C/A upstream_transcript_variant
rs1000105727 -- 54,202,049(+) G/A downstream_transcript_variant
rs1000256954 -- 54,197,018(+) G/A/T intron_variant
rs1000428458 -- 54,188,607(+) G/C upstream_transcript_variant
rs1000541138 -- 54,201,794(+) A/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369777 Gene

Disorders for LOC105369777 Gene

No disorders were found for LOC105369777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369777 Gene

Publications for LOC105369777 Gene

No publications were found for LOC105369777 Gene.

No data available for External Links for LOC105369777 Gene

Products for LOC105369777 Gene

Sources for LOC105369777 Gene

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