Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105369748 Gene

Subcategory (RNA class) for LOC105369748 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369748 Gene

  • Uncharacterized LOC105369748 3

External Ids for LOC105369748 Gene

Previous GeneCards Identifiers for LOC105369748 Gene

  • GC12U902197

Summaries for LOC105369748 Gene

GeneCards Summary for LOC105369748 Gene

LOC105369748 (Uncharacterized LOC105369748) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369748 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369748 Gene

Genomics for LOC105369748 Gene

GeneHancer (GH) Regulatory Elements for LOC105369748 Gene

Promoters and enhancers for LOC105369748 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J047704 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 600.7 +0.1 143 3.2 ZNF473 ZFX ELF3 NKRF POLR2A ZNF121 CEBPG GTF2F1 ZSCAN21 AHR ENSG00000257433 LOC105369748 RPAP3 RAPGEF3 OR5BK1P VDR SLC48A1 H1FNT HDAC7 SENP1
GH12J047713 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +10.3 10343 6 ZNF652 CC2D1A CTCF YY1 SP7 ELF1 SP1 PRDM1 RAD21 KAT8 RAPGEF3 ENSG00000257433 SLC48A1 ENSG00000269514 HDAC7 VDR KANSL2 TMEM106C ENSG00000205537 ASB8
GH12J047725 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 0.4 +19.9 19940 1.6 ZNF687 CTBP1 FOS EBF1 SMAD5 MYC MAX ENDOU ENSG00000257433 RAPGEF3 ENSG00000280054 LOC105369748
GH12J047739 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 +34.7 34657 2.3 ZFX NFIB SP5 PRDM1 MLLT1 ZNF600 PRDM10 ZIC2 CTCF PKNOX1 ENDOU ENSG00000257433 RAPGEF3 HDAC7 ENSG00000274902 SLC48A1 LOC105369748
GH12J047721 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +16.2 16198 2.1 CTBP1 ESRRA ZNF217 NR2F1 DPF2 NFIB RCOR1 SMARCE1 HLF E2F8 RAPGEF3 SLC48A1 TMEM106C ENSG00000257433 ENDOU LOC105369748
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369748 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369748 Gene

Genomic Locations for LOC105369748 Gene
chr12:47,706,058-47,740,134
(GRCh38/hg38)
Size:
34,077 bases
Orientation:
Plus strand

Genomic View for LOC105369748 Gene

Genes around LOC105369748 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369748 Gene

Proteins for LOC105369748 Gene

Post-translational modifications for LOC105369748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369748 Gene

Domains & Families for LOC105369748 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369748 Gene

Function for LOC105369748 Gene

Phenotypes From GWAS Catalog for LOC105369748 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369748 Gene

Localization for LOC105369748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369748 Gene

Pathways & Interactions for LOC105369748 Gene

PathCards logo

SuperPathways for LOC105369748 Gene

No Data Available

Interacting Proteins for LOC105369748 Gene

Gene Ontology (GO) - Biological Process for LOC105369748 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369748 Gene

Drugs & Compounds for LOC105369748 Gene

No Compound Related Data Available

Transcripts for LOC105369748 Gene

mRNA/cDNA for LOC105369748 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369748 Gene

No ASD Table

Relevant External Links for LOC105369748 Gene

GeneLoc Exon Structure for
LOC105369748

Expression for LOC105369748 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369748 Gene

Orthologs for LOC105369748 Gene

No data available for Orthologs and Evolution for LOC105369748 Gene

Paralogs for LOC105369748 Gene

No data available for Paralogs for LOC105369748 Gene

Variants for LOC105369748 Gene

Sequence variations from dbSNP and Humsavar for LOC105369748 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000028826 -- 47,736,483(+) G/A/C/T genic_downstream_transcript_variant, intron_variant
rs1000170129 -- 47,717,595(+) T/A intron_variant, non_coding_transcript_variant
rs1000280617 -- 47,711,881(+) /TAAT intron_variant
rs1000306747 -- 47,730,531(+) T/C genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000344496 -- 47,724,337(+) G/A genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369748 Gene

Disorders for LOC105369748 Gene

No disorders were found for LOC105369748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369748 Gene

Publications for LOC105369748 Gene

No publications were found for LOC105369748 Gene.

No data available for External Links for LOC105369748 Gene

Products for LOC105369748 Gene

Sources for LOC105369748 Gene

Content
Loading form....