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Aliases for LOC105369696 Gene

Subcategory (RNA class) for LOC105369696 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369696 Gene

  • Uncharacterized LOC105369696 3

External Ids for LOC105369696 Gene

Previous GeneCards Identifiers for LOC105369696 Gene

  • GC12U902141

Summaries for LOC105369696 Gene

GeneCards Summary for LOC105369696 Gene

LOC105369696 (Uncharacterized LOC105369696) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369696 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369696 Gene

Genomics for LOC105369696 Gene

GeneHancer (GH) Regulatory Elements for LOC105369696 Gene

Promoters and enhancers for LOC105369696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J023722 Enhancer 1.2 UCNEbase Ensembl 0.4 -15.7 -15667 0.8 CBFA2T2 GTF2F1 CDC5L TRIM24 SMARCA4 DPF2 IKZF1 ATF1 PKNOX1 POLR2A GC12P023722 LOC105369696 SOX5
GH12J023753 Enhancer 0.9 Ensembl ENCODE 0.4 +17.1 17051 7.8 KAT8 SOX13 CEBPA ZNF316 FOXA2 MAFG ARNT TEAD1 FOXP1 FOXA1 ENSG00000256473 SOX5 LOC105369696 GC12P023951
GH12J023771 Enhancer 1 UCNEbase Ensembl 0.3 +32.9 32906 0.3 SP1 RXRA JUND YY1 ZBTB33 HNF4A MAX REST ATF3 HLF ENSG00000256473 SOX5 LOC105369696 GC12P023951
GH12J023740 Enhancer 0.4 Ensembl 0.7 +2.1 2051 0.6 PKNOX1 NANOG LOC105369696 GC12P023951 SOX5
GH12J023781 Enhancer 0.8 FANTOM5 0.3 +42.5 42525 0.2 CC2D1A CBFA2T2 MLLT1 ZNF639 SMARCA4 DPF2 RFX1 ATF1 HDAC1 EP300 SOX5 LOC105369696 GC12P023951
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369696 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369696 Gene

Genomic Locations for LOC105369696 Gene
chr12:23,738,650-23,757,019
(GRCh38/hg38)
Size:
18,370 bases
Orientation:
Plus strand

Genomic View for LOC105369696 Gene

Genes around LOC105369696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369696 Gene

Proteins for LOC105369696 Gene

Post-translational modifications for LOC105369696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369696 Gene

Domains & Families for LOC105369696 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369696 Gene

Function for LOC105369696 Gene

Phenotypes From GWAS Catalog for LOC105369696 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369696 Gene

Localization for LOC105369696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369696 Gene

Pathways & Interactions for LOC105369696 Gene

PathCards logo

SuperPathways for LOC105369696 Gene

No Data Available

Interacting Proteins for LOC105369696 Gene

Gene Ontology (GO) - Biological Process for LOC105369696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369696 Gene

Drugs & Compounds for LOC105369696 Gene

No Compound Related Data Available

Transcripts for LOC105369696 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369696 Gene

No ASD Table

Relevant External Links for LOC105369696 Gene

GeneLoc Exon Structure for
LOC105369696

No data available for mRNA/cDNA for LOC105369696 Gene

Expression for LOC105369696 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369696 Gene

Orthologs for LOC105369696 Gene

No data available for Orthologs and Evolution for LOC105369696 Gene

Paralogs for LOC105369696 Gene

No data available for Paralogs for LOC105369696 Gene

Variants for LOC105369696 Gene

Sequence variations from dbSNP and Humsavar for LOC105369696 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1057518845 likely-pathogenic, Aplasia/Hypoplasia of the nails, Central hypotonia, Generalized hypotonia, Strabismus, Thoracolumbar scoliosis 23,755,726(+) T/G intron_variant
rs1000461284 -- 23,757,499(+) C/T downstream_transcript_variant
rs1000607808 -- 23,757,025(+) A/C non_coding_transcript_variant
rs1002103223 -- 23,756,908(+) G/A intron_variant
rs1002155593 -- 23,756,605(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369696 Gene

Disorders for LOC105369696 Gene

No disorders were found for LOC105369696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369696 Gene

Publications for LOC105369696 Gene

No publications were found for LOC105369696 Gene.

No data available for External Links for LOC105369696 Gene

Products for LOC105369696 Gene

Sources for LOC105369696 Gene

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