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Aliases for LOC105369691 Gene
Data sources for LOC105369691 Gene:
Subcategory (RNA class) for LOC105369691 Gene
lncRNA
Aliases for LOC105369691 Gene
- Uncharacterized LOC105369691 (NCBI Entrez Gene)
- NONHSAG010675.2 (NONCODE)
- HSALNG0089828 (LncBook)
- Lnc-C2CD5-3 (LNCipedia)
External Ids for LOC105369691 Gene
- NCBI Entrez Gene: 105369691
Previous GeneCards Identifiers for LOC105369691 Gene
- GC12U902278
Summaries for LOC105369691 Gene
GeneCards Summary for LOC105369691 Gene
LOC105369691 (Uncharacterized LOC105369691) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105369691 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369691 Gene
Genomics for LOC105369691 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105369691 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J022623 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | -0.4 | -362 | 5.9 | TBP ZBTB10 SP1 MXD4 CEBPA MNT IKZF1 SMAD5 MBD2 POLR2A | ENSG00000257023 ETNK1 LOC105369691 C2CD5 lnc-CMAS-4 | |
| GH12J022595 | Enhancer | 0.8 | Ensembl ENCODE | 0.3 | +28.0 | 27976 | 5.4 | CEBPA FOXA2 RXRA JUND HNF4A CEBPG SP1 ARID3A HNF1A ZNF644 | LOC112268094 C2CD5 ENSG00000256774 lnc-ETNK1-7 ENSG00000257023 ETNK1 LOC105369691 ENSG00000250166 | |
| GH12J022631 | Enhancer | 0.5 | ENCODE | 0.4 | -5.7 | -5735 | 0.1 | CTCF SMC3 RAD21 ZNF384 ARID2 ZNF654 | ETNK1 LOC105369691 lnc-CMAS-4 | |
| GH12J022588 | Enhancer | 0.5 | Ensembl ENCODE | 0.3 | +37.4 | 37355 | 1.1 | RFX1 BMI1 | C2CD5 piR-39081 LOC105369692 LOC105369691 ETNK1 ENSG00000250166 | |
| GH12J022633 | Enhancer | 0.2 | Ensembl | 0.4 | -7.2 | -7204 | 0.2 | lnc-CMAS-4 ETNK1 LOC105369691 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105369691 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105369691 Gene
Latest Assembly
- chr12:22,567,994-22,626,297
- (GRCh38/hg38)
- Size:
- 58,304 bases
- Orientation:
- Minus strand
Previous Assembly
- chr12:22,741,941-22,777,980
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 36,040 bases
- Orientation:
- Minus strand
Genomic View for LOC105369691 Gene
Genes around LOC105369691 on UCSC Golden Path with GeneCards custom track
LOC105369691 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p12.1 by Entrez Gene
LOC105369691 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105369691 Gene
Proteins for LOC105369691 Gene
Post-translational modifications for LOC105369691 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC105369691 Gene
Domains & Families for LOC105369691 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369691 Gene
Function for LOC105369691 Gene
Phenotypes From GWAS Catalog for LOC105369691 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369691 Gene
Localization for LOC105369691 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369691 Gene
Transcripts for LOC105369691 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369691 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A77181_9606 | lncRNA | 746 | 2 |
RefSeq: NR_135030, LNCipedia: lnc-C2CD5-3:3, |
| URS0000A76F5F_9606 | lncRNA | 554 | 1 |
RefSeq: NR_135031, |
| URS00008B31DB_9606 | lncRNA | 952 | 3 |
LncBook: HSALNT0186530, LNCipedia: lnc-C2CD5-3:1, NONCODE: NONHSAT027283.2, |
| URS0000D59AF3_9606 | lncRNA | 883 | 2 |
LncBook: HSALNT0186533, LNCipedia: lnc-C2CD5-3:5, |
| URS0000D58F1D_9606 | lncRNA | 805 | 2 |
LncBook: HSALNT0186535, LNCipedia: lnc-C2CD5-3:6, |
LOC105369691 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105369691 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC105369691 Gene
- GeneLoc Exon Structure for
- LOC105369691
Expression for LOC105369691 Gene
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369691 Gene
Orthologs for LOC105369691 Gene
No data available for Orthologs and Evolution for LOC105369691 Gene
Paralogs for LOC105369691 Gene
No data available for Paralogs for LOC105369691 Gene
Variants for LOC105369691 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369691 Gene
Disorders for LOC105369691 Gene
No disorders were found for LOC105369691 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369691 Gene
Publications for LOC105369691 Gene
No publications were found for LOC105369691 Gene.
No data available for Mastermind for LOC105369691 Gene
Products for LOC105369691 Gene
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- Lentiviral ORF Clones
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Sources for LOC105369691 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB