Aliases for LOC105369691 Gene

Subcategory (RNA class) for LOC105369691 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105369691 Gene

  • Uncharacterized LOC105369691 3
  • NONHSAG010675.2 91
  • HSALNG0089828 164
  • Lnc-C2CD5-3 165

External Ids for LOC105369691 Gene

Previous GeneCards Identifiers for LOC105369691 Gene

  • GC12U902278

Summaries for LOC105369691 Gene

GeneCards Summary for LOC105369691 Gene

LOC105369691 (Uncharacterized LOC105369691) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369691 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369691 Gene

Genomics for LOC105369691 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369691 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J022623 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.6 -1570 5.9 SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 IKZF1 NFKBIZ ZNF692 ENSG00000257023 ETNK1 LOC105369691 C2CD5 lnc-CMAS-4
GH12J022595 Enhancer 0.9 Ensembl ENCODE 0.3 +26.8 26768 5.4 REST SP1 CEBPA SOX13 CEBPB FOXA2 YY1 JUND ZBTB11 FOSL2 LOC112268094 C2CD5 ENSG00000256774 lnc-ETNK1-7 LOC105369691 ETNK1 ENSG00000257023 ENSG00000250166
GH12J022631 Enhancer 0.5 ENCODE 0.4 -6.9 -6943 0.1 CTCF RAD21 SMC3 ZNF384 ZNF654 CC2D1A ARID2 LOC105369691 ETNK1 lnc-CMAS-4
GH12J022588 Enhancer 0.5 Ensembl ENCODE 0.3 +36.1 36147 1.1 RFX1 BMI1 C2CD5 piR-39081 LOC105369692 ETNK1 LOC105369691 ENSG00000250166
GH12J022594 Enhancer 0.2 Ensembl 0.3 +31.0 30988 0.2 C2CD5 ENSG00000256774 lnc-ETNK1-7 piR-39081 ETNK1 LOC105369691 ENSG00000250166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369691 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369691 Gene

Genomic Locations for LOC105369691 Gene
chr12:22,567,995-22,625,089
(GRCh38/hg38)
Size:
57,095 bases
Orientation:
Minus strand

Genomic View for LOC105369691 Gene

Genes around LOC105369691 on UCSC Golden Path with GeneCards custom track
LOC105369691 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105369691 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369691 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369691 Gene

Proteins for LOC105369691 Gene

Post-translational modifications for LOC105369691 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369691 Gene

Domains & Families for LOC105369691 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369691 Gene

Function for LOC105369691 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369691 Gene

Localization for LOC105369691 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369691 Gene

Pathways & Interactions for LOC105369691 Gene

PathCards logo

SuperPathways for LOC105369691 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369691 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369691 Gene

Drugs & Compounds for LOC105369691 Gene

No Compound Related Data Available

Transcripts for LOC105369691 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369691 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A77181_9606 lncRNA 742 2

RefSeq: NR_135030,

LNCipedia: lnc-C2CD5-3:3,

URS0000A76F5F_9606 lncRNA 554 1

RefSeq: NR_135031,

URS00008B31DB_9606 lncRNA 949 3

LncBook: HSALNT0186530,

LNCipedia: lnc-C2CD5-3:1,

NONCODE: NONHSAT027283.2,

URS0000D59AF3_9606 lncRNA 883 2

LncBook: HSALNT0186533,

LNCipedia: lnc-C2CD5-3:5,

URS0000D5B932_9606 lncRNA 905 1

LNCipedia: lnc-C2CD5-3:4,

LOC105369691 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105369691 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369691 Gene

No ASD Table

Relevant External Links for LOC105369691 Gene

GeneLoc Exon Structure for
LOC105369691

Expression for LOC105369691 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369691 Gene

Orthologs for LOC105369691 Gene

No data available for Orthologs and Evolution for LOC105369691 Gene

Paralogs for LOC105369691 Gene

No data available for Paralogs for LOC105369691 Gene

Variants for LOC105369691 Gene

Additional dbSNP identifiers (rs#s) for LOC105369691 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369691 Gene

Disorders for LOC105369691 Gene

No disorders were found for LOC105369691 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369691 Gene

Publications for LOC105369691 Gene

No publications were found for LOC105369691 Gene.

No data available for Mastermind for LOC105369691 Gene

Products for LOC105369691 Gene

Sources for LOC105369691 Gene