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Aliases for LOC105369670 Gene

Subcategory (RNA class) for LOC105369670 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369670 Gene

  • Uncharacterized LOC105369670 3

External Ids for LOC105369670 Gene

Previous GeneCards Identifiers for LOC105369670 Gene

  • GC12U902437

Summaries for LOC105369670 Gene

GeneCards Summary for LOC105369670 Gene

LOC105369670 (Uncharacterized LOC105369670) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105369670 include Retinal Cone Dystrophy 3A and Cone Dystrophy 3.

Additional gene information for LOC105369670 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369670 Gene

Genomics for LOC105369670 Gene

GeneHancer (GH) Regulatory Elements for LOC105369670 Gene

Promoters and enhancers for LOC105369670 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J014989 Promoter/Enhancer 1.1 Ensembl dbSUPER 600.7 -0.2 -240 0.2 IKZF1 IKZF2 RUNX3 MEF2D JUNB BATF ATF2 ZNF217 CBFA2T3 LOC105369670 ARHGDIB LINC01489
GH12J014988 Enhancer 0.8 FANTOM5 dbSUPER 600.7 +1.4 1426 0.2 CREM MLLT1 IKZF1 IKZF2 PKNOX1 RUNX3 NBN ATF2 ATF7 TARDBP LOC105369670 ARHGDIB GC12P014973 GC12P014974
GH12J014945 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +34.3 34347 19.1 SP1 ELF3 NKRF ZNF687 RELA CREM MLLT1 ZNF644 ZNF639 ZBED1 ARHGDIB ERP27 MGP PDE6H WBP11 ART4 H2AFJ HIST4H4 SMCO3 C12orf60
GH12J014980 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.0 7037 3.1 RELA IKZF1 IKZF2 RUNX3 BCL11A GABPA POLR2A MYC MAX ARHGDIB PDE6H LOC105369670 GC12P014974 GC12P014973
GH12J014993 Enhancer 0.8 Ensembl ENCODE 0.7 -4.6 -4586 4.1 ZNF384 CTCF RAD21 REST TRIM22 YY1 SMC3 ZNF654 JUND ZNF362 ARHGDIB LOC105369670 LINC01489
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369670 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369670 Gene

Genomic Locations for LOC105369670 Gene
chr12:14,962,604-14,989,661
(GRCh38/hg38)
Size:
27,058 bases
Orientation:
Minus strand

Genomic View for LOC105369670 Gene

Genes around LOC105369670 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369670 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369670 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369670 Gene

Proteins for LOC105369670 Gene

Post-translational modifications for LOC105369670 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369670 Gene

Domains & Families for LOC105369670 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369670 Gene

Function for LOC105369670 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369670 Gene

Localization for LOC105369670 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369670 Gene

Pathways & Interactions for LOC105369670 Gene

PathCards logo

SuperPathways for LOC105369670 Gene

No Data Available

Interacting Proteins for LOC105369670 Gene

Gene Ontology (GO) - Biological Process for LOC105369670 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369670 Gene

Drugs & Compounds for LOC105369670 Gene

No Compound Related Data Available

Transcripts for LOC105369670 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369670 Gene

No ASD Table

Relevant External Links for LOC105369670 Gene

GeneLoc Exon Structure for
LOC105369670

No data available for mRNA/cDNA for LOC105369670 Gene

Expression for LOC105369670 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369670 Gene

Orthologs for LOC105369670 Gene

No data available for Orthologs and Evolution for LOC105369670 Gene

Paralogs for LOC105369670 Gene

No data available for Paralogs for LOC105369670 Gene

Variants for LOC105369670 Gene

Sequence variations from dbSNP and Humsavar for LOC105369670 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs11056264 benign, Cone dystrophy 3 14,973,069(-) G/C/T intron_variant
rs114575851 likely-benign, Cone dystrophy 3 14,977,984(-) G/C intron_variant
rs144778897 uncertain-significance, Cone dystrophy 3 14,981,547(-) C/T intron_variant
rs200311463 pathogenic, Achromatopsia 6, Retinal cone dystrophy 3A 14,978,047(-) C/G intron_variant
rs2230872 benign, Cone dystrophy 3 14,981,419(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369670 Gene

Disorders for LOC105369670 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC105369670 Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinal cone dystrophy 3a
  • rcd3a
cone dystrophy 3
  • cod3
achromatopsia
  • achromatopsia 2
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105369670: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369670 Gene

Publications for LOC105369670 Gene

No publications were found for LOC105369670 Gene.

No data available for External Links for LOC105369670 Gene

Products for LOC105369670 Gene

Sources for LOC105369670 Gene

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