Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105369616 Gene

Subcategory (RNA class) for LOC105369616 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369616 Gene

  • Uncharacterized LOC105369616 3

External Ids for LOC105369616 Gene

Previous GeneCards Identifiers for LOC105369616 Gene

  • GC12U902383

Summaries for LOC105369616 Gene

GeneCards Summary for LOC105369616 Gene

LOC105369616 (Uncharacterized LOC105369616) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369616 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369616 Gene

Genomics for LOC105369616 Gene

GeneHancer (GH) Regulatory Elements for LOC105369616 Gene

Promoters and enhancers for LOC105369616 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J005200 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 +0.3 263 2.6 CTCF ZNF148 RAD21 REST PATZ1 ZNF561 EGR1 USF1 ZFHX2 ZNF189 LOC105369616 ENSG00000255983 GC12P006213 LOC105369617
GH12J005204 Enhancer 0.7 Ensembl ENCODE 0.7 -2.4 -2437 1.6 SP1 POLR2A USF1 ZNF143 SIN3A BACH1 LOC105369616 LINC02443 LOC105369617
GH12J005222 Enhancer 0.9 Ensembl ENCODE 0.4 -19.2 -19237 2.8 SP1 CBFA2T2 ZIC2 POLR2A EP300 EZH2 RUNX3 NCOR1 ZNF423 WT1 LOC105369616 LINC02443 LOC105369617
GH12J005166 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +34.8 34766 1.2 POLR2A FOS RCOR1 JUND ENSG00000255983 NTF3 LOC105369616 GC12P006209 GC12P006213 LOC105369617
GH12J005173 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +28.4 28353 1.2 RXRA JUND ENSG00000255983 LOC105369616 GC12P006209 GC12P006213 LOC105369617
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369616 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369616 Gene

Genomic Locations for LOC105369616 Gene
chr12:5,198,224-5,201,964
(GRCh38/hg38)
Size:
3,741 bases
Orientation:
Minus strand

Genomic View for LOC105369616 Gene

Genes around LOC105369616 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369616 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369616 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369616 Gene

Proteins for LOC105369616 Gene

Post-translational modifications for LOC105369616 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369616 Gene

Domains & Families for LOC105369616 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369616 Gene

Function for LOC105369616 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369616 Gene

Localization for LOC105369616 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369616 Gene

Pathways & Interactions for LOC105369616 Gene

PathCards logo

SuperPathways for LOC105369616 Gene

No Data Available

Interacting Proteins for LOC105369616 Gene

Gene Ontology (GO) - Biological Process for LOC105369616 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369616 Gene

Drugs & Compounds for LOC105369616 Gene

No Compound Related Data Available

Transcripts for LOC105369616 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369616 Gene

No ASD Table

Relevant External Links for LOC105369616 Gene

GeneLoc Exon Structure for
LOC105369616

No data available for mRNA/cDNA for LOC105369616 Gene

Expression for LOC105369616 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369616 Gene

Orthologs for LOC105369616 Gene

No data available for Orthologs and Evolution for LOC105369616 Gene

Paralogs for LOC105369616 Gene

No data available for Paralogs for LOC105369616 Gene

Variants for LOC105369616 Gene

Sequence variations from dbSNP and Humsavar for LOC105369616 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000326844 -- 5,201,244(-) G/A intron_variant
rs1001154458 -- 5,198,824(-) C/T intron_variant
rs1001458827 -- 5,201,423(-) T/C intron_variant
rs1001700026 -- 5,204,168(-) C/T upstream_transcript_variant
rs1001828142 -- 5,201,697(-) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369616 Gene

Disorders for LOC105369616 Gene

No disorders were found for LOC105369616 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369616 Gene

Publications for LOC105369616 Gene

No publications were found for LOC105369616 Gene.

No data available for External Links for LOC105369616 Gene

Products for LOC105369616 Gene

Sources for LOC105369616 Gene

Content
Loading form....