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Aliases for LOC105369602 Gene

Subcategory (RNA class) for LOC105369602 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369602 Gene

  • Uncharacterized LOC105369602 3

External Ids for LOC105369602 Gene

Previous GeneCards Identifiers for LOC105369602 Gene

  • GC12U902171

Summaries for LOC105369602 Gene

GeneCards Summary for LOC105369602 Gene

LOC105369602 (Uncharacterized LOC105369602) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105369602 include Retinal Cone Dystrophy 4 and Cone Dystrophy 4.

Additional gene information for LOC105369602 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369602 Gene

Genomics for LOC105369602 Gene

GeneHancer (GH) Regulatory Elements for LOC105369602 Gene

Promoters and enhancers for LOC105369602 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J001800 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.2 181 0.1 CTCF RAD21 ZNF600 ZIC2 TRIM22 ZNF143 HLF LOC105369602 CACNA2D4 LOC105369601
GH12J001795 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.7 -3.5 -3498 3.5 SP1 ELF3 CTCF NKRF POLR2A ZNF687 AHR SP7 SP5 KLF14 CACNA2D4 LOC105369602 PIR31589
GH12J001804 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.7 +4.0 4009 1.1 SP1 ZFX ELF3 SIX5 ZNF121 ZNF687 YY1 ELF1 POLR2A CREM CACNA2D4 LOC105369602 LOC105369601
GH12J001810 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +11.3 11296 4.2 ELF3 CBFA2T2 ZNF148 CEBPG BACH1 TRIM24 PPARG ZNF384 ZNF644 SMARCA4 CACNA2D4 LOC105369601 ENSG00000256706 LOC105369602
GH12J001790 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.1 -9118 2.2 CTCF POLR2A RAD21 RXRA ARID2 ZIC2 REST TRIM22 ZNF10 MBD1 CACNA2D4 ENSG00000256706 PIR31589 LOC105369602
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369602 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369602 Gene

Genomic Locations for LOC105369602 Gene
chr12:1,800,619-1,807,491
(GRCh38/hg38)
Size:
6,873 bases
Orientation:
Plus strand

Genomic View for LOC105369602 Gene

Genes around LOC105369602 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369602 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369602 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369602 Gene

Proteins for LOC105369602 Gene

Post-translational modifications for LOC105369602 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369602 Gene

Domains & Families for LOC105369602 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369602 Gene

Function for LOC105369602 Gene

Phenotypes From GWAS Catalog for LOC105369602 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369602 Gene

Localization for LOC105369602 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369602 Gene

Pathways & Interactions for LOC105369602 Gene

PathCards logo

SuperPathways for LOC105369602 Gene

No Data Available

Interacting Proteins for LOC105369602 Gene

Gene Ontology (GO) - Biological Process for LOC105369602 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369602 Gene

Drugs & Compounds for LOC105369602 Gene

No Compound Related Data Available

Transcripts for LOC105369602 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369602 Gene

No ASD Table

Relevant External Links for LOC105369602 Gene

GeneLoc Exon Structure for
LOC105369602

No data available for mRNA/cDNA for LOC105369602 Gene

Expression for LOC105369602 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369602 Gene

Orthologs for LOC105369602 Gene

No data available for Orthologs and Evolution for LOC105369602 Gene

Paralogs for LOC105369602 Gene

No data available for Paralogs for LOC105369602 Gene

Variants for LOC105369602 Gene

Sequence variations from dbSNP and Humsavar for LOC105369602 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs147575839 benign, uncertain-significance, not specified, Cone dystrophy 3 1,801,133(+) C/T intron_variant
rs201325274 likely-benign, Retinal cone dystrophy 4 1,800,416(+) G/A upstream_transcript_variant
rs202022529 benign, uncertain-significance, not specified, Cone dystrophy 3 1,800,379(+) C/G upstream_transcript_variant
rs62621429 benign, likely-benign, not specified, Cone dystrophy 3 1,801,620(+) C/T intron_variant
rs756341043 uncertain-significance, Cone dystrophy 3 1,800,061(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369602 Gene

Disorders for LOC105369602 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC105369602 Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinal cone dystrophy 4
  • rcd4
cone dystrophy 4
  • cod4
cone dystrophy 3
  • cod3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105369602: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369602 Gene

Publications for LOC105369602 Gene

No publications were found for LOC105369602 Gene.

No data available for External Links for LOC105369602 Gene

Products for LOC105369602 Gene

Sources for LOC105369602 Gene

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