Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105369595 Gene

Subcategory (RNA class) for LOC105369595 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369595 Gene

  • Uncharacterized LOC105369595 3

External Ids for LOC105369595 Gene

Previous GeneCards Identifiers for LOC105369595 Gene

  • GC12U902186

Summaries for LOC105369595 Gene

GeneCards Summary for LOC105369595 Gene

LOC105369595 (Uncharacterized LOC105369595) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369595 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369595 Gene

Genomics for LOC105369595 Gene

GeneHancer (GH) Regulatory Elements for LOC105369595 Gene

Promoters and enhancers for LOC105369595 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000590 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 600.7 -0.8 -829 2.2 ZFX CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 BACH1 TRIM24 EGR1 ENSG00000255825 GC12P000592 LOC105369595 PIR50035 ENSG00000256020 ENSG00000177406 GC12M000616 NINJ2
GH12J000588 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.2 1229 0.2 LOC105369595 GC12P000592 PIR50035 ENSG00000255825 RNU7-103P NINJ2
GH12J000591 Enhancer 0.2 dbSUPER 600.7 +0.7 695 0.6 ENSG00000255825 RNU7-103P LOC105369595 GC12P000592 PIR50035 ENSG00000256020 ENSG00000177406 NINJ2
GH12J000585 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +5.6 5628 0.6 ELF3 CEBPG RERE TFE3 SP1 PPARG SP5 ZNF384 KAT8 HMG20B ENSG00000256020 PIR38262 GC12P000588 PIR38511 LOC105369595 GC12M000554 NINJ2
GH12J000609 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.4 -19.3 -19336 2.5 ELF3 BACH1 MAFK SP1 RAD21 IKZF1 GLIS2 RXRA IKZF2 ZNF512 ENSG00000177406 ENSG00000261799 RAD52 ERC1 ENSG00000256020 NINJ2 GC12M000616 LOC105369595
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369595 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369595 Gene

Genomic Locations for LOC105369595 Gene
chr12:585,698-591,130
(GRCh38/hg38)
Size:
5,433 bases
Orientation:
Minus strand

Genomic View for LOC105369595 Gene

Genes around LOC105369595 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369595 Gene

Proteins for LOC105369595 Gene

Post-translational modifications for LOC105369595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369595 Gene

Domains & Families for LOC105369595 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369595 Gene

Function for LOC105369595 Gene

Phenotypes From GWAS Catalog for LOC105369595 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369595 Gene

Localization for LOC105369595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369595 Gene

Pathways & Interactions for LOC105369595 Gene

PathCards logo

SuperPathways for LOC105369595 Gene

No Data Available

Interacting Proteins for LOC105369595 Gene

Gene Ontology (GO) - Biological Process for LOC105369595 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369595 Gene

Drugs & Compounds for LOC105369595 Gene

No Compound Related Data Available

Transcripts for LOC105369595 Gene

mRNA/cDNA for LOC105369595 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369595 Gene

No ASD Table

Relevant External Links for LOC105369595 Gene

GeneLoc Exon Structure for
LOC105369595

Expression for LOC105369595 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369595 Gene

Orthologs for LOC105369595 Gene

No data available for Orthologs and Evolution for LOC105369595 Gene

Paralogs for LOC105369595 Gene

No data available for Paralogs for LOC105369595 Gene

Variants for LOC105369595 Gene

Sequence variations from dbSNP and Humsavar for LOC105369595 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000371241 -- 585,270(-) G/C downstream_transcript_variant
rs1002738991 -- 586,891(-) C/T upstream_transcript_variant
rs1003718225 -- 587,703(-) G/T upstream_transcript_variant
rs1005571824 -- 587,786(-) C/T upstream_transcript_variant
rs1006166665 -- 586,076(-) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369595 Gene

Disorders for LOC105369595 Gene

No disorders were found for LOC105369595 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369595 Gene

Publications for LOC105369595 Gene

  1. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 58

No data available for External Links for LOC105369595 Gene

Products for LOC105369595 Gene

Sources for LOC105369595 Gene

Content
Loading form....