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Aliases for LOC105369594 Gene

Subcategory (RNA class) for LOC105369594 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369594 Gene

  • Uncharacterized LOC105369594 3

External Ids for LOC105369594 Gene

Previous GeneCards Identifiers for LOC105369594 Gene

  • GC12U902121

Summaries for LOC105369594 Gene

GeneCards Summary for LOC105369594 Gene

LOC105369594 (Uncharacterized LOC105369594) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369594 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369594 Gene

Genomics for LOC105369594 Gene

GeneHancer (GH) Regulatory Elements for LOC105369594 Gene

Promoters and enhancers for LOC105369594 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000400 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 -0.4 -353 2.2 ZFX SP1 SIX5 NKRF POLR2A MLLT1 CEBPG GTF2F1 ZSCAN21 CTCF KDM5A LOC105369594 CCDC77 WASH8P ENSG00000256948 GC12P000428
GH12J000386 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +13.0 13047 4.2 SP1 ZFX ELF3 SIX5 NKRF POLR2A MLLT1 ZNF121 GTF2F1 ZSCAN21 KDM5A CCDC77 WASH8P IQSEC3 RAD52 ENSG00000261799 GC12M000384 LOC105369594 PIR47780
GH12J000406 Enhancer 1.5 VISTA Ensembl ENCODE 0.4 -6.2 -6198 3.5 CBFA2T2 ZSCAN21 BACH1 MAFK TRIM24 SP7 PRDM1 SMARCA4 DPF2 IKZF1 CCDC77 RAD52 B4GALNT3 SLC6A13 LOC102723544 LOC105369594 GC12P000428
GH12J000423 Enhancer 0.2 Ensembl 0.3 -22.0 -21953 0.2 GC12P000428 LOC105369594 CCDC77
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369594 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369594 Gene

Genomic Locations for LOC105369594 Gene
chr12:389,977-401,548
(GRCh38/hg38)
Size:
11,572 bases
Orientation:
Minus strand

Genomic View for LOC105369594 Gene

Genes around LOC105369594 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369594 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369594 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369594 Gene

Proteins for LOC105369594 Gene

Post-translational modifications for LOC105369594 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369594 Gene

Domains & Families for LOC105369594 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369594 Gene

Function for LOC105369594 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369594 Gene

Localization for LOC105369594 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369594 Gene

Pathways & Interactions for LOC105369594 Gene

PathCards logo

SuperPathways for LOC105369594 Gene

No Data Available

Interacting Proteins for LOC105369594 Gene

Gene Ontology (GO) - Biological Process for LOC105369594 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369594 Gene

Drugs & Compounds for LOC105369594 Gene

No Compound Related Data Available

Transcripts for LOC105369594 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369594 Gene

No ASD Table

Relevant External Links for LOC105369594 Gene

GeneLoc Exon Structure for
LOC105369594

No data available for mRNA/cDNA for LOC105369594 Gene

Expression for LOC105369594 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369594 Gene

Orthologs for LOC105369594 Gene

No data available for Orthologs and Evolution for LOC105369594 Gene

Paralogs for LOC105369594 Gene

No data available for Paralogs for LOC105369594 Gene

Variants for LOC105369594 Gene

Sequence variations from dbSNP and Humsavar for LOC105369594 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000132435 -- 389,696(-) T/C downstream_transcript_variant
rs1000250492 -- 394,545(-) T/C intron_variant
rs1000537905 -- 402,984(-) T/C upstream_transcript_variant
rs1000591107 -- 393,215(-) A/G intron_variant
rs1001150200 -- 398,848(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369594 Gene

Disorders for LOC105369594 Gene

No disorders were found for LOC105369594 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369594 Gene

Publications for LOC105369594 Gene

No publications were found for LOC105369594 Gene.

No data available for External Links for LOC105369594 Gene

Products for LOC105369594 Gene

Sources for LOC105369594 Gene

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