LOC105369540 Gene (RNA Gene)

Uncharacterized LOC105369540

GC11P123204
GIFtS:
3

Aliases for LOC105369540 Gene

Subcategory (RNA class) for LOC105369540 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369540 Gene

  • Uncharacterized LOC105369540 3

External Ids for LOC105369540 Gene

Previous GeneCards Identifiers for LOC105369540 Gene

  • GC11U902715

Summaries for LOC105369540 Gene

GeneCards Summary for LOC105369540 Gene

LOC105369540 (Uncharacterized LOC105369540) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369540 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369540 Gene

Genomics for LOC105369540 Gene

GeneHancer (GH) Regulatory Elements for LOC105369540 Gene

Promoters and enhancers for LOC105369540 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123201 Enhancer 0.8 ENCODE CraniofacialAtlas dbSUPER 750.6 -1.7 -1699 2.2 MAX ZIC2 RFX1 MNT NR2F2 LOC105369540 CLMP lnc-GRAMD1B-5 ENSG00000254710
GH11J123207 Enhancer 0.3 Ensembl dbSUPER 750.6 +2.0 1989 0.2 LOC105369539 LOC105369540 RF00017-1057 ENSG00000254710
GH11J123206 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +2.9 2878 1 RFX1 GATA3 LOC105369539 RF00017-1057 LOC105369540 lnc-CLMP-1 ENSG00000254710
GH11J123197 Enhancer 0.7 ENCODE dbSUPER 0.4 -6.3 -6347 1.4 POLR2A CEBPB EP300 FOS RCOR1 ZFHX2 CLMP lnc-GRAMD1B-5 ENSG00000254710 LOC105369540
GH11J123200 Enhancer 0.2 Ensembl 0.6 -3.3 -3311 0.4 LOC105369540 lnc-GRAMD1B-5 ENSG00000254710
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369540 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369540 Gene

Genomic Locations for LOC105369540 Gene
chr11:123,204,312-123,208,396
(GRCh38/hg38)
Size:
4,085 bases
Orientation:
Plus strand

Genomic View for LOC105369540 Gene

Genes around LOC105369540 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369540 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369540 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105369540 Gene

Proteins for LOC105369540 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105369540 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369540 Gene

Domains & Families for LOC105369540 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369540 Gene

Function for LOC105369540 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369540 Gene

Localization for LOC105369540 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369540 Gene

Pathways & Interactions for LOC105369540 Gene

PathCards logo

SuperPathways for LOC105369540 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369540 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369540 Gene

Drugs & Compounds for LOC105369540 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105369540 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369540 Gene

No ASD Table

Relevant External Links for LOC105369540 Gene

GeneLoc Exon Structure for
LOC105369540

No data available for mRNA/cDNA for LOC105369540 Gene

Expression for LOC105369540 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369540 Gene

Orthologs for LOC105369540 Gene

No data available for Orthologs and Evolution for LOC105369540 Gene

Paralogs for LOC105369540 Gene

No data available for Paralogs for LOC105369540 Gene

Variants for LOC105369540 Gene

Sequence variations from dbSNP and Humsavar for LOC105369540 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000461814 -- 123,207,248(+) A/C non_coding_transcript_variant
rs1000908603 -- 123,205,525(+) T/C intron_variant
rs1001190628 -- 123,204,746(+) G/A intron_variant
rs1001241641 -- 123,204,491(+) C/T non_coding_transcript_variant
rs1001688052 -- 123,204,804(+) T/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369540 Gene

Disorders for LOC105369540 Gene

No disorders were found for LOC105369540 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369540 Gene

Publications for LOC105369540 Gene

No publications were found for LOC105369540 Gene.

No data available for External Links for LOC105369540 Gene

Products for LOC105369540 Gene

Sources for LOC105369540 Gene