Aliases for LOC105369535 Gene

Data sources for LOC105369535 Gene:

RNA type for LOC105369535 Gene

lncRNA

Aliases for LOC105369535 Gene

External Ids for LOC105369535 Gene

Previous GeneCards Identifiers for LOC105369535 Gene

  • GC11U902459

Summaries for LOC105369535 Gene

GeneCards Summary for LOC105369535 Gene

LOC105369535 (Uncharacterized LOC105369535) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369535 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369535 Gene

Genomics for LOC105369535 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369535 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J121481 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.9 -1902 5 BCLAF1 POLR2A EBF1 SPI1 MYC MAX ELF1 IKZF1 NFATC1 HDGF LOC105369535 SORL1 ENSG00000246790 piR-48759-045 BLID
GH11J121458 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.6 17649 10.9 BCLAF1 SP1 ZNF600 SSRP1 JUND KLF9 POLR2A CEBPA ZNF10 ATF3 SC5D TECTA SORL1 ENSG00000246790 LOC105369535 BLID
GH11J121477 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.7 +2.7 2715 2.2 POLR2A JUND CTBP1 RXRA PAX8 ZBTB33 ESRRA TCF7L2 SPI1 MYC SORL1 ENSG00000246790 LOC105369535 BLID
GH11J121471 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +7.5 7488 7 JUND CEBPA YY1 FOXA1 HOMEZ THAP11 FOXA2 MAFF SMAD4 RXRA ENSG00000246790 SORL1 LOC105369535 BLID
GH11J121469 Enhancer 0.5 dbSUPER 0.4 +11.6 11590 0.9 YY1 RXRA JUND HNF4A MAX SP1 ATF3 LOC105369535 ENSG00000246790 SORL1 BLID
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369535 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369535 Gene

Latest Assembly
chr11:121,473,147-121,481,789
(GRCh38/hg38)
Size:
8,643 bases
Orientation:
Minus strand

Previous Assembly
chr11:121,343,856-121,351,370
(GRCh37/hg19 by Entrez Gene)
Size:
7,515 bases
Orientation:
Minus strand

Genomic View for LOC105369535 Gene

Genes around LOC105369535 on UCSC Golden Path with GeneCards custom track
LOC105369535 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105369535 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369535 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369535 Gene

Proteins for LOC105369535 Gene

Post-translational modifications for LOC105369535 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369535 Gene

Domains & Families for LOC105369535 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369535 Gene

Function for LOC105369535 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369535 Gene

Localization for LOC105369535 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369535 Gene

Pathways & Interactions for LOC105369535 Gene

PathCards logo

SuperPathways for LOC105369535 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369535 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369535 Gene

Drugs & Compounds for LOC105369535 Gene

No Compound Related Data Available

Transcripts for LOC105369535 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369535 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0001BBE3B7_9606 lncRNA 930 1

RefSeq: NR_169501,

URS0000EB5D7D_9606 lncRNA 489 1

LncBook: HSALNT0182293,

LOC105369535 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369535 Gene

No ASD Table

Relevant External Links for LOC105369535 Gene

GeneLoc Exon Structure for
LOC105369535

No data available for mRNA/cDNA for LOC105369535 Gene

Expression for LOC105369535 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369535 Gene

Orthologs for LOC105369535 Gene

No data available for Orthologs and Evolution for LOC105369535 Gene

Paralogs for LOC105369535 Gene

No data available for Paralogs for LOC105369535 Gene

Variants for LOC105369535 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105369535 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369535 Gene

Disorders for LOC105369535 Gene

No disorders were found for LOC105369535 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369535 Gene

Publications for LOC105369535 Gene

No publications were found for LOC105369535 Gene.

No data available for Mastermind for LOC105369535 Gene

Products for LOC105369535 Gene

Sources for LOC105369535 Gene