Aliases for LOC105369532 Gene

Data sources for LOC105369532 Gene:

RNA type for LOC105369532 Gene

lncRNA

Aliases for LOC105369532 Gene

External Ids for LOC105369532 Gene

Previous GeneCards Identifiers for LOC105369532 Gene

  • GC11U902650

Summaries for LOC105369532 Gene

GeneCards Summary for LOC105369532 Gene

LOC105369532 (Uncharacterized LOC105369532) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369532 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369532 Gene

Genomics for LOC105369532 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369532 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J120817 Enhancer 0.8 ENCODE 250.7 +1.7 1656 1.1 ZMYM3 CEBPA CHD4 HOMEZ FOXA2 KDM6A SMAD4 SAP130 ETV4 RARA LOC105369532 GRIK4 HSALNG0087714 TBCEL
GH11J120805 Enhancer 1.1 Ensembl ENCODE 0.4 +12.5 12472 3.9 ZNF600 JUND KLF9 CEBPA ATF3 YY1 MXD4 KLF11 ZFP64 HOMEZ SC5D LOC105369532 HSALNG0087714 TBCEL GRIK4
GH11J120815 Enhancer 0.4 ENCODE 0.7 +4.1 4145 0.2 JUND ZNF217 ZBTB40 SMARCE1 LOC105369532 HSALNG0087714 TBCEL GRIK4
GH11J120835 Enhancer 0.7 Ensembl 0.4 -15.8 -15828 0.2 SP1 IRF4 EBF1 BHLHE40 BATF IKZF1 BMI1 JUNB PKNOX1 KLF5 LOC105369532 HSALNG0087716 TBCEL GRIK4
GH11J120832 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 -12.9 -12929 1.6 GATA2 SPI1 POLR2A USF1 GRIK4 LOC105369532 HSALNG0087716 TBCEL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369532 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369532 Gene

Latest Assembly
chr11:120,811,026-120,820,072
(GRCh38/hg38)
Size:
9,047 bases
Orientation:
Minus strand

Previous Assembly
chr11:120,682,054-120,689,824
(GRCh37/hg19 by Entrez Gene)
Size:
7,771 bases
Orientation:
Minus strand

Genomic View for LOC105369532 Gene

Genes around LOC105369532 on UCSC Golden Path with GeneCards custom track
LOC105369532 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105369532 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369532 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369532 Gene

Proteins for LOC105369532 Gene

Post-translational modifications for LOC105369532 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369532 Gene

Domains & Families for LOC105369532 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369532 Gene

Function for LOC105369532 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369532 Gene

Localization for LOC105369532 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369532 Gene

Pathways & Interactions for LOC105369532 Gene

PathCards logo

SuperPathways for LOC105369532 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369532 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369532 Gene

Drugs & Compounds for LOC105369532 Gene

No Compound Related Data Available

Transcripts for LOC105369532 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369532 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008E3962_9606 lncRNA 420 2

RefSeq: NR_133008,

LNCipedia: lnc-TRIM29-46:1,

URS0001BF8FB1_9606 lncRNA 1527 1

LncBook: HSALNT0182227,

URS0001BEA62B_9606 lncRNA 1260 1

LncBook: HSALNT0182226,

URS0001BCE1D0_9606 lncRNA 967 1

LncBook: HSALNT0182224,

URS0001BE48DF_9606 lncRNA 939 1

LncBook: HSALNT0182228,

LOC105369532 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105369532 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369532 Gene

No ASD Table

Relevant External Links for LOC105369532 Gene

GeneLoc Exon Structure for
LOC105369532

Expression for LOC105369532 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369532 Gene

Orthologs for LOC105369532 Gene

No data available for Orthologs and Evolution for LOC105369532 Gene

Paralogs for LOC105369532 Gene

No data available for Paralogs for LOC105369532 Gene

Variants for LOC105369532 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105369532 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs36083836 Benign: not provided 120,815,415(-) C/G
NM_014619.5(GRIK4):c.285C>G (p.Leu95=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105369532 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369532 Gene

Disorders for LOC105369532 Gene

No disorders were found for LOC105369532 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369532 Gene

Publications for LOC105369532 Gene

No publications were found for LOC105369532 Gene.

No data available for Mastermind for LOC105369532 Gene

Products for LOC105369532 Gene

Sources for LOC105369532 Gene