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Aliases for LOC105369517 Gene

Subcategory (RNA class) for LOC105369517 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369517 Gene

  • Uncharacterized LOC105369517 3

External Ids for LOC105369517 Gene

Previous GeneCards Identifiers for LOC105369517 Gene

  • GC11U902675

Summaries for LOC105369517 Gene

GeneCards Summary for LOC105369517 Gene

LOC105369517 (Uncharacterized LOC105369517) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369517 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369517 Gene

Genomics for LOC105369517 Gene

GeneHancer (GH) Regulatory Elements for LOC105369517 Gene

Promoters and enhancers for LOC105369517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J118098 Enhancer 0.5 Ensembl 600.7 -0.7 -723 1.8 ZNF512 ZIC2 KLF9 POLR2A ZNF366 BCL6 EGR2 LOC105369517 TMPRSS4 IL10RA TMPRSS13 CD3E SCN4B PIR33394
GH11J118102 Enhancer 0.8 Ensembl 0.7 -3.9 -3923 0.6 CBFA2T2 ZNF148 TRIM24 EGR1 SMARCA4 GMEB1 DPF2 ATF1 LEF1 ZNF24 TMPRSS4 TMPRSS13 IL10RA SCN4B LOC105369517 PIR33394
GH11J118091 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.5 6528 2.4 ZNF652 CBFA2T2 SP5 ZNF644 IKZF1 SOX13 GATAD2A RXRB HDAC1 RCOR2 CD3E SCN4B SMIM35 LOC105369517 TMPRSS4
GH11J118088 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +10.2 10177 2.4 FOSL2 CTBP1 NR2C1 FOXA2 ZNF217 DPF2 ZNF274 SIN3A ELF1 FOXA1 SMIM35 UBE4A ENSG00000254909 RPL23AP64 ENSG00000254428 ENSG00000254851 CD3E TMPRSS4 SCN4B LOC105369517
GH11J118095 Enhancer 0.7 Ensembl 0.7 +3.3 3277 0.6 ELF3 HNF1A RCOR2 IRF2 ZNF316 NFE2 MAFG NR2C2 CREM NR2F2 SCN4B LOC105369517 SMIM35 TMPRSS4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369517 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369517 Gene

Genomic Locations for LOC105369517 Gene
chr11:118,092,347-118,098,978
(GRCh38/hg38)
Size:
6,632 bases
Orientation:
Minus strand

Genomic View for LOC105369517 Gene

Genes around LOC105369517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369517 Gene

Proteins for LOC105369517 Gene

Post-translational modifications for LOC105369517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369517 Gene

Domains & Families for LOC105369517 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369517 Gene

Function for LOC105369517 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369517 Gene

Localization for LOC105369517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369517 Gene

Pathways & Interactions for LOC105369517 Gene

PathCards logo

SuperPathways for LOC105369517 Gene

No Data Available

Interacting Proteins for LOC105369517 Gene

Gene Ontology (GO) - Biological Process for LOC105369517 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369517 Gene

Drugs & Compounds for LOC105369517 Gene

No Compound Related Data Available

Transcripts for LOC105369517 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369517 Gene

No ASD Table

Relevant External Links for LOC105369517 Gene

GeneLoc Exon Structure for
LOC105369517

No data available for mRNA/cDNA for LOC105369517 Gene

Expression for LOC105369517 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369517 Gene

Orthologs for LOC105369517 Gene

No data available for Orthologs and Evolution for LOC105369517 Gene

Paralogs for LOC105369517 Gene

No data available for Paralogs for LOC105369517 Gene

Variants for LOC105369517 Gene

Sequence variations from dbSNP and Humsavar for LOC105369517 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000133899 -- 118,094,083(-) A/C intron_variant
rs1000400891 -- 118,096,715(-) G/A intron_variant
rs1000800460 -- 118,097,320(-) A/C intron_variant
rs1001121205 -- 118,092,921(-) C/A intron_variant
rs1002123104 -- 118,098,169(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369517 Gene

Disorders for LOC105369517 Gene

No disorders were found for LOC105369517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369517 Gene

Publications for LOC105369517 Gene

No publications were found for LOC105369517 Gene.

No data available for External Links for LOC105369517 Gene

Products for LOC105369517 Gene

Sources for LOC105369517 Gene

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