Aliases for LOC105369509 Gene

Subcategory (RNA class) for LOC105369509 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for LOC105369509 Gene

  • Uncharacterized LOC105369509 3
  • Lnc-NXPE2-2 170

External Ids for LOC105369509 Gene

Previous GeneCards Identifiers for LOC105369509 Gene

  • GC11U902673

Summaries for LOC105369509 Gene

GeneCards Summary for LOC105369509 Gene

LOC105369509 (Uncharacterized LOC105369509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369509 Gene

Genomics for LOC105369509 Gene

GeneHancer (GH) Regulatory Elements for LOC105369509 Gene

Promoters and enhancers for LOC105369509 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J115334 Enhancer 0.4 Ensembl 750.6 +0.8 760 0.6 CTCF FOXA2 FOXA1 ENSG00000256972 ENSG00000287897 LOC105369509 ENSG00000255580 CADM1
GH11J115333 Enhancer 0.2 Ensembl 750.6 -0.3 -340 0.4 ENSG00000256972 ENSG00000287897 LOC105369509 hsa-miR-5095-079 CADM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369509 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369509 Gene

Genomic Locations for LOC105369509 Gene
chr11:115,333,541-115,340,439
(GRCh38/hg38)
Size:
6,899 bases
Orientation:
Plus strand

Genomic View for LOC105369509 Gene

Genes around LOC105369509 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369509 Gene

Proteins for LOC105369509 Gene

Post-translational modifications for LOC105369509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369509 Gene

Domains & Families for LOC105369509 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369509 Gene

Function for LOC105369509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369509 Gene

Localization for LOC105369509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369509 Gene

Pathways & Interactions for LOC105369509 Gene

PathCards logo

SuperPathways for LOC105369509 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369509 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369509 Gene

Drugs & Compounds for LOC105369509 Gene

No Compound Related Data Available

Transcripts for LOC105369509 Gene

mRNA/cDNA for LOC105369509 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369509 Gene

No ASD Table

Relevant External Links for LOC105369509 Gene

GeneLoc Exon Structure for
LOC105369509

Expression for LOC105369509 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369509 Gene

Orthologs for LOC105369509 Gene

No data available for Orthologs and Evolution for LOC105369509 Gene

Paralogs for LOC105369509 Gene

No data available for Paralogs for LOC105369509 Gene

Variants for LOC105369509 Gene

Sequence variations from dbSNP and Humsavar for LOC105369509 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000934111 -- 115,336,460(+) C/T intron_variant
rs1001071358 -- 115,336,243(+) C/G intron_variant
rs1001548931 -- 115,340,113(+) T/A non_coding_transcript_variant
rs1002384495 -- 115,335,109(+) A/G intron_variant
rs1002479603 -- 115,334,890(+) A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369509 Gene

Disorders for LOC105369509 Gene

No disorders were found for LOC105369509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369509 Gene

Publications for LOC105369509 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 56

No data available for External Links for LOC105369509 Gene

Products for LOC105369509 Gene

Sources for LOC105369509 Gene