Free for academic non-profit institutions. Other users need a Commercial license

LOC105369509 Gene(RNA Gene)

Uncharacterized LOC105369509

GCID:
GC11P115334
GIFtS:
6
Genes Participants
UDN Logo

Aliases for LOC105369509 Gene

Subcategory (RNA class) for LOC105369509 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369509 Gene

  • Uncharacterized LOC105369509 3

External Ids for LOC105369509 Gene

Previous GeneCards Identifiers for LOC105369509 Gene

  • GC11U902673

Summaries for LOC105369509 Gene

GeneCards Summary for LOC105369509 Gene

LOC105369509 (Uncharacterized LOC105369509) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369509 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369509 Gene

Genomics for LOC105369509 Gene

GeneHancer (GH) Regulatory Elements for LOC105369509 Gene

Promoters and enhancers for LOC105369509 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J115324 Enhancer 0.6 ENCODE 0.4 -8.8 -8764 0.2 ELF3 CTCF ELF1 PRDM1 RAD21 PKNOX1 TRIM22 SMC3 MIER3 GATA3 LOC105369509 GC11P115292 CADM1
GH11J115316 Enhancer 0.6 Ensembl 0.4 -16.3 -16340 1.2 ZSCAN4 ZNF662 ZBTB17 POLR2A ZNF366 ZNF324 MAFK ZNF513 LOC105369509 GC11P115292 CADM1
GH11J115305 Enhancer 0.6 Ensembl 0.3 -28.1 -28140 0.8 CREB1 ZNF629 TSHZ1 FOXA2 PKNOX1 ZBTB17 RCOR1 GATA3 FOXA1 FOS ENSG00000256972 GC11P115292 LOC105369509 CADM1
GH11J115302 Enhancer 0.5 Ensembl 0.3 -30.2 -30240 1 POLR2A OSR2 ZNF768 FEZF1 ZNF843 PRDM6 GC11P115292 LOC105369509 CADM1
GH11J115330 Enhancer 0.2 Ensembl 0.7 -2.4 -2440 0.6 LOC105369509 GC11P115292 CADM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369509 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369509 Gene

Genomic Locations for LOC105369509 Gene
chr11:115,333,541-115,340,262
(GRCh38/hg38)
Size:
6,722 bases
Orientation:
Plus strand

Genomic View for LOC105369509 Gene

Genes around LOC105369509 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369509 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105369509 Gene

Proteins for LOC105369509 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105369509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369509 Gene

Domains & Families for LOC105369509 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369509 Gene

Function for LOC105369509 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369509 Gene

Localization for LOC105369509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369509 Gene

Pathways & Interactions for LOC105369509 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
PathCards logo

SuperPathways for LOC105369509 Gene

No Data Available

Interacting Proteins for LOC105369509 Gene

Gene Ontology (GO) - Biological Process for LOC105369509 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369509 Gene

Drugs & Compounds for LOC105369509 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LOC105369509 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105369509 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369509 Gene

No ASD Table

Relevant External Links for LOC105369509 Gene

GeneLoc Exon Structure for
LOC105369509

Expression for LOC105369509 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369509 Gene

Orthologs for LOC105369509 Gene

No data available for Orthologs and Evolution for LOC105369509 Gene

Paralogs for LOC105369509 Gene

No data available for Paralogs for LOC105369509 Gene

Variants for LOC105369509 Gene

Products:

  1. SNP Genotyping and Copy Number Assay
VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LOC105369509 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000934111 -- 115,336,460(+) C/T intron_variant
rs1001071358 -- 115,336,243(+) C/G intron_variant
rs1001548931 -- 115,340,113(+) T/A non_coding_transcript_variant
rs1002384495 -- 115,335,109(+) A/G intron_variant
rs1002479603 -- 115,334,890(+) A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369509 Gene

Disorders for LOC105369509 Gene

No disorders were found for LOC105369509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369509 Gene

Publications for LOC105369509 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

No data available for External Links for LOC105369509 Gene

Products for LOC105369509 Gene

Sources for LOC105369509 Gene

Content
Loading form....