Aliases for LOC105369507 Gene

Subcategory (RNA class) for LOC105369507 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105369507 Gene

  • Uncharacterized LOC105369507 3
  • Novel Transcript 5
  • NONHSAG009678.2 91
  • HSALNG0087347 164
  • Lnc-NXPE2-52 165
  • AP000462.2 5

External Ids for LOC105369507 Gene

Previous GeneCards Identifiers for LOC105369507 Gene

  • GC11U902688

Summaries for LOC105369507 Gene

GeneCards Summary for LOC105369507 Gene

LOC105369507 (Uncharacterized LOC105369507) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369507 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369507 Gene

Genomics for LOC105369507 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369507 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J115396 Enhancer 0.5 ENCODE 600.7 0.0 -38 0.2 ZNF629 SCRT2 SCRT1 ZNF366 PRDM6 ZBTB21 GFI1B SP7 LOC105369507 ENSG00000255580 CADM1 NXPE4
GH11J115397 Enhancer 0.2 Ensembl 600.7 +0.7 745 0.2 LOC105369507 ENSG00000256972 CADM1 lnc-NXPE4-4 NXPE4
GH11J115421 Enhancer 0.9 Ensembl ENCODE 11.7 +25.0 25045 2 ZNF629 PRDM1 ZIC2 SCRT2 ZNF792 ZBTB44 TCF7L2 ZXDB OSR2 BCL11A LOC105369507 lnc-NXPE4-4 CADM1 NXPE4
GH11J115476 Enhancer 0.8 Ensembl 11.5 +79.7 79745 0.2 ZNF629 ZIC2 ZNF239 ZBTB44 ZNF639 KLF7 ZNF10 ZXDB TSHZ1 ZSCAN5C LOC105369507 NXPE4 CADM1 lnc-NXPE4-4
GH11J115477 Enhancer 0.6 Ensembl 11.5 +80.9 80945 0.2 ZNF629 FOXA1 ZNF600 ZBTB44 FOXA2 WT1 FEZF1 PRDM6 GLIS1 SMARCA4 CADM1 LOC105369507 lnc-NXPE4-4 NXPE4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369507 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369507 Gene

Genomic Locations for LOC105369507 Gene
chr11:115,396,756-115,397,659
(GRCh38/hg38)
Size:
904 bases
Orientation:
Plus strand
chr11:115,267,474-115,268,376
(GRCh37/hg19)
Size:
903 bases
Orientation:
Plus strand

Genomic View for LOC105369507 Gene

Genes around LOC105369507 on UCSC Golden Path with GeneCards custom track
LOC105369507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105369507 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369507 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369507 Gene

Proteins for LOC105369507 Gene

Post-translational modifications for LOC105369507 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369507 Gene

Domains & Families for LOC105369507 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369507 Gene

Function for LOC105369507 Gene

Phenotypes From GWAS Catalog for LOC105369507 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369507 Gene

Localization for LOC105369507 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369507 Gene

Pathways & Interactions for LOC105369507 Gene

PathCards logo

SuperPathways for LOC105369507 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369507 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369507 Gene

Drugs & Compounds for LOC105369507 Gene

No Compound Related Data Available

Transcripts for LOC105369507 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369507 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B365A_9606 lncRNA 715 4

Ensembl: ENST00000540545 (view in UCSC) ,

LncBook: HSALNT0181470,

LNCipedia: lnc-NXPE2-52:4,

NONCODE: NONHSAT024306.2,

URS00008B61BF_9606 lncRNA 526 4

Ensembl: ENST00000543182 (view in UCSC) ,

LncBook: HSALNT0181466,

LNCipedia: lnc-NXPE2-52:1,

NONCODE: NONHSAT024304.2,

URS00008B85FE_9606 lncRNA 384 4

Ensembl: ENST00000539685 (view in UCSC) ,

LncBook: HSALNT0181468,

LNCipedia: lnc-NXPE2-52:3,

NONCODE: NONHSAT024305.2,

URS0000A77520_9606 lncRNA 529 1

RefSeq: NR_135103,

URS0000A768A1_9606 lncRNA 526 1

RefSeq: NR_135102,

LOC105369507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105369507 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369507 Gene

No ASD Table

Relevant External Links for LOC105369507 Gene

GeneLoc Exon Structure for
LOC105369507

Expression for LOC105369507 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369507 Gene

Orthologs for LOC105369507 Gene

Evolution for LOC105369507 Gene

ENSEMBL:
Gene Tree for LOC105369507 (if available)
TreeFam:
Gene Tree for LOC105369507 (if available)

No data available for Orthologs for LOC105369507 Gene

Paralogs for LOC105369507 Gene

No data available for Paralogs for LOC105369507 Gene

Variants for LOC105369507 Gene

Additional dbSNP identifiers (rs#s) for LOC105369507 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369507 Gene

Disorders for LOC105369507 Gene

Additional Disease Information for LOC105369507

No disorders were found for LOC105369507 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105369507 Gene

Publications for LOC105369507 Gene

No publications were found for LOC105369507 Gene.

No data available for Mastermind for LOC105369507 Gene

Products for LOC105369507 Gene

Sources for LOC105369507 Gene