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Aliases for LOC105369507 Gene
Subcategory (RNA class) for LOC105369507 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC105369507 Gene
External Ids for LOC105369507 Gene
- Entrez Gene: 105369507
- Ensembl: ENSG00000256315
Previous GeneCards Identifiers for LOC105369507 Gene
- GC11U902688
Summaries for LOC105369507 Gene
GeneCards Summary for LOC105369507 Gene
LOC105369507 (Uncharacterized LOC105369507) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105369507 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369507 Gene
Genomics for LOC105369507 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105369507 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J115396 | Enhancer | 0.5 | ENCODE | 600.7 | 0.0 | -38 | 0.2 | ZNF629 SCRT2 SCRT1 ZNF366 PRDM6 ZBTB21 GFI1B SP7 | LOC105369507 ENSG00000255580 CADM1 NXPE4 | |
| GH11J115397 | Enhancer | 0.2 | Ensembl | 600.7 | +0.7 | 745 | 0.2 | LOC105369507 ENSG00000256972 CADM1 lnc-NXPE4-4 NXPE4 | ||
| GH11J115421 | Enhancer | 0.9 | Ensembl ENCODE | 11.7 | +25.0 | 25045 | 2 | ZNF629 PRDM1 ZIC2 SCRT2 ZNF792 ZBTB44 TCF7L2 ZXDB OSR2 BCL11A | LOC105369507 lnc-NXPE4-4 CADM1 NXPE4 | |
| GH11J115476 | Enhancer | 0.8 | Ensembl | 11.5 | +79.7 | 79745 | 0.2 | ZNF629 ZIC2 ZNF239 ZBTB44 ZNF639 KLF7 ZNF10 ZXDB TSHZ1 ZSCAN5C | LOC105369507 NXPE4 CADM1 lnc-NXPE4-4 | |
| GH11J115477 | Enhancer | 0.6 | Ensembl | 11.5 | +80.9 | 80945 | 0.2 | ZNF629 FOXA1 ZNF600 ZBTB44 FOXA2 WT1 FEZF1 PRDM6 GLIS1 SMARCA4 | CADM1 LOC105369507 lnc-NXPE4-4 NXPE4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105369507 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105369507 Gene
Genomic Locations for LOC105369507 Gene
- chr11:115,396,756-115,397,659
- (GRCh38/hg38)
- Size:
- 904 bases
- Orientation:
- Plus strand
- chr11:115,267,474-115,268,376
- (GRCh37/hg19)
- Size:
- 903 bases
- Orientation:
- Plus strand
Genomic View for LOC105369507 Gene
Genes around LOC105369507 on UCSC Golden Path with GeneCards custom track
LOC105369507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
LOC105369507 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105369507 Gene
Proteins for LOC105369507 Gene
Post-translational modifications for LOC105369507 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105369507
- Origene Custom Protein Services for LOC105369507
No data available for DME Specific Peptides for LOC105369507 Gene
Domains & Families for LOC105369507 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369507 Gene
Function for LOC105369507 Gene
Phenotypes From GWAS Catalog for LOC105369507 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369507 Gene
Localization for LOC105369507 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369507 Gene
Transcripts for LOC105369507 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369507 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B365A_9606 | lncRNA | 715 | 4 |
Ensembl: ENST00000540545 (view in UCSC) , LncBook: HSALNT0181470, LNCipedia: lnc-NXPE2-52:4, NONCODE: NONHSAT024306.2, |
| URS00008B61BF_9606 | lncRNA | 526 | 4 |
Ensembl: ENST00000543182 (view in UCSC) , LncBook: HSALNT0181466, LNCipedia: lnc-NXPE2-52:1, NONCODE: NONHSAT024304.2, |
| URS00008B85FE_9606 | lncRNA | 384 | 4 |
Ensembl: ENST00000539685 (view in UCSC) , LncBook: HSALNT0181468, LNCipedia: lnc-NXPE2-52:3, NONCODE: NONHSAT024305.2, |
| URS0000A77520_9606 | lncRNA | 529 | 1 |
RefSeq: NR_135103, |
| URS0000A768A1_9606 | lncRNA | 526 | 1 |
RefSeq: NR_135102, |
LOC105369507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105369507 Gene
- 4 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105369507 Gene
- GeneLoc Exon Structure for
- LOC105369507
Expression for LOC105369507 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369507 Gene
Orthologs for LOC105369507 Gene
No data available for Orthologs for LOC105369507 Gene
Paralogs for LOC105369507 Gene
No data available for Paralogs for LOC105369507 Gene
Variants for LOC105369507 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369507 Gene
Disorders for LOC105369507 Gene
Additional Disease Information for LOC105369507
No disorders were found for LOC105369507 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105369507 Gene
Publications for LOC105369507 Gene
No publications were found for LOC105369507 Gene.
No data available for Mastermind for LOC105369507 Gene
Products for LOC105369507 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105369507
- Origene Custom Protein Services for LOC105369507
- Browse OriGene Inhibitory RNA Products For LOC105369507
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC105369507
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC105369507
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105369507
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC105369507
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC105369507
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC105369507
Sources for LOC105369507 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB