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Aliases for LOC105369507 Gene
Subcategory (RNA class) for LOC105369507 Gene
lncRNA
Aliases for LOC105369507 Gene
External Ids for LOC105369507 Gene
- NCBI Entrez Gene: 105369507
- Ensembl: ENSG00000256315
Previous GeneCards Identifiers for LOC105369507 Gene
- GC11U902688
Summaries for LOC105369507 Gene
GeneCards Summary for LOC105369507 Gene
LOC105369507 (Uncharacterized LOC105369507) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105369507 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369507 Gene
Genomics for LOC105369507 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105369507 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J115396 | Enhancer | 0.7 | Ensembl ENCODE | 250.7 | -0.1 | -54 | 0.2 | PRDM6 SCRT1 ZBTB21 SP7 ZNF366 ZNF629 GFI1B | LOC105369507 ENSG00000255580 CADM1 NXPE4 | |
| GH11J115421 | Enhancer | 0.9 | Ensembl ENCODE | 11.7 | +25.0 | 25045 | 2.4 | FEZF1 ZIC2 ZNF843 PRDM6 ZNF24 SCRT1 RCOR1 SP7 GATA2 PRDM4 | LOC105369507 lnc-NXPE4-4 CADM1 NXPE4 | |
| GH11J115476 | Enhancer | 0.8 | Ensembl | 11.5 | +79.7 | 79746 | 0.2 | ZSCAN16 FEZF1 ZIC2 ZNF610 ZNF639 KLF7 ZNF843 ZNF146 PRDM6 ZBTB1 | LOC105369507 NXPE4 lnc-NXPE4-4 CADM1 | |
| GH11J115477 | Enhancer | 0.6 | Ensembl | 11.5 | +80.9 | 80946 | 0.2 | FEZF1 FOXA1 FOXA2 PRDM6 GLIS1 ARID3A ZNF629 GFI1B FOXA3 WT1 | CADM1 LOC105369507 lnc-NXPE4-4 NXPE4 | |
| GH11J115407 | Enhancer | 1.2 | Ensembl ENCODE CraniofacialAtlas | 0.4 | +12.5 | 12545 | 4.2 | FEZF1 CEBPA FOXA1 HOMEZ THAP11 FOXA2 SMAD4 SAP130 MIER3 ETV4 | ENSG00000256972 LOC105369507 CADM1 lnc-NXPE4-4 NXPE4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105369507 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105369507 Gene
Latest Assembly
- chr11:115,396,755-115,397,659
- (GRCh38/hg38)
- Size:
- 905 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:115,267,474-115,268,376
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 903 bases
- Orientation:
- Plus strand
- chr11:115,267,474-115,268,376
- (GRCh37/hg19 by Ensembl)
- Size:
- 903 bases
- Orientation:
- Plus strand
Genomic View for LOC105369507 Gene
Genes around LOC105369507 on UCSC Golden Path with GeneCards custom track
LOC105369507 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
LOC105369507 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105369507 Gene
Proteins for LOC105369507 Gene
Post-translational modifications for LOC105369507 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC105369507 Gene
Domains & Families for LOC105369507 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369507 Gene
Function for LOC105369507 Gene
Phenotypes From GWAS Catalog for LOC105369507 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369507 Gene
Localization for LOC105369507 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369507 Gene
Transcripts for LOC105369507 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369507 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B365A_9606 | lncRNA | 717 | 4 |
Ensembl: ENST00000540545 (view in UCSC) , LncBook: HSALNT0181470, LNCipedia: lnc-NXPE2-52:4, NONCODE: NONHSAT024306.2, |
| URS00008B61BF_9606 | lncRNA | 528 | 4 |
Ensembl: ENST00000543182 (view in UCSC) , LncBook: HSALNT0181466, LNCipedia: lnc-NXPE2-52:1, NONCODE: NONHSAT024304.2, |
| URS00008B85FE_9606 | lncRNA | 386 | 4 |
Ensembl: ENST00000539685 (view in UCSC) , LncBook: HSALNT0181468, LNCipedia: lnc-NXPE2-52:3, NONCODE: NONHSAT024305.2, |
| URS0000A77520_9606 | lncRNA | 529 | 1 |
RefSeq: NR_135103, |
| URS0000A768A1_9606 | lncRNA | 526 | 1 |
RefSeq: NR_135102, |
LOC105369507 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105369507 Gene
- 4 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC105369507 Gene
- GeneLoc Exon Structure for
- LOC105369507
Expression for LOC105369507 Gene
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369507 Gene
Orthologs for LOC105369507 Gene
No data available for Orthologs for LOC105369507 Gene
Paralogs for LOC105369507 Gene
No data available for Paralogs for LOC105369507 Gene
Variants for LOC105369507 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369507 Gene
Disorders for LOC105369507 Gene
Additional Disease Information for LOC105369507
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC105369507 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105369507 Gene
Publications for LOC105369507 Gene
No publications were found for LOC105369507 Gene.
No data available for Mastermind for LOC105369507 Gene
Products for LOC105369507 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105369507
- Origene Custom Protein Services for LOC105369507
- Browse OriGene Inhibitory RNA Products For LOC105369507
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC105369507
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC105369507
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105369507
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC105369507
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC105369507
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC105369507
Sources for LOC105369507 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB