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Aliases for LOC105369496 Gene
Data sources for LOC105369496 Gene:
Subcategory (RNA class) for LOC105369496 Gene
lncRNA
Aliases for LOC105369496 Gene
External Ids for LOC105369496 Gene
- NCBI Entrez Gene: 105369496
- Ensembl: ENSG00000287006
Previous GeneCards Identifiers for LOC105369496 Gene
- GC11U902732
Summaries for LOC105369496 Gene
GeneCards Summary for LOC105369496 Gene
LOC105369496 (Uncharacterized LOC105369496) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105369496 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369496 Gene
Genomics for LOC105369496 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105369496 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J112733 | Enhancer | 0.5 | dbSUPER | 250.7 | +0.7 | 662 | 6.3 | SIN3A REST MYC MAX EHMT2 MIER2 ZNF143 ZNF766 MIER1 | LOC105369496 NCAM1 HSALNG0087210 ENSG00000285769 PLET1 | |
| GH11J112747 | Enhancer | 0.9 | Ensembl CraniofacialAtlas dbSUPER | 0.4 | -11.3 | -11307 | 0.8 | FEZF1 ZIC2 GLIS1 SP7 TRIM28 PKNOX1 EGR2 NR2F2 ZFHX2 | NCAM1 HSALNG0087218 LOC105369496 ENSG00000285769 PLET1 | |
| GH11J112756 | Enhancer | 0.6 | Ensembl ENCODE dbSUPER | 0.4 | -19.9 | -19925 | 1.3 | ATF2 | HSALNG0087218 NCAM1 LOC105369496 PLET1 | |
| GH11J112750 | Enhancer | 0.4 | Ensembl dbSUPER | 0.4 | -13.5 | -13507 | 0.8 | ZIC2 | NCAM1 HSALNG0087218 LOC105369496 ENSG00000285769 PLET1 | |
| GH11J112695 | Enhancer | 0.4 | Ensembl | 0.3 | +42.8 | 42758 | 0.5 | JUND CTCF ATF2 ATF7 | HSALNG0087210 LOC105369496 ENSG00000285769 NCAM1 PLET1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105369496 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105369496 Gene
Latest Assembly
- chr11:112,698,772-112,737,694
- (GRCh38/hg38)
- Size:
- 38,923 bases
- Orientation:
- Minus strand
Genomic View for LOC105369496 Gene
Genes around LOC105369496 on UCSC Golden Path with GeneCards custom track
LOC105369496 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.1-q23.2 by Entrez Gene
- 11q23.2 by Ensembl
LOC105369496 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105369496 Gene
Proteins for LOC105369496 Gene
Post-translational modifications for LOC105369496 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC105369496 Gene
Domains & Families for LOC105369496 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369496 Gene
Function for LOC105369496 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369496 Gene
Localization for LOC105369496 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369496 Gene
Transcripts for LOC105369496 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369496 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000EF226E_9606 | lncRNA | 620 | 1 |
Ensembl: ENST00000662440 (view in UCSC) , |
| URS00008B81F3_9606 | lncRNA | 615 | 3 |
LncBook: HSALNT0181229, LNCipedia: lnc-PLET1-5:1, NONCODE: NONHSAT024224.2, |
| URS00009B279E_9606 | lncRNA | 1266 | 2 |
LncBook: HSALNT0181228, NONCODE: NONHSAT160734.1, |
| URS00009B20CF_9606 | lncRNA | 737 | 2 |
LncBook: HSALNT0181230, NONCODE: NONHSAT160735.1, |
| URS0001BEEBD9_9606 | lncRNA | 1269 | 1 |
LncBook: HSALNT0181228, |
LOC105369496 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC105369496 Gene
- GeneLoc Exon Structure for
- LOC105369496
No data available for mRNA/cDNA for LOC105369496 Gene
Expression for LOC105369496 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369496 Gene
Orthologs for LOC105369496 Gene
No data available for Orthologs for LOC105369496 Gene
Paralogs for LOC105369496 Gene
No data available for Paralogs for LOC105369496 Gene
Variants for LOC105369496 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369496 Gene
Disorders for LOC105369496 Gene
No disorders were found for LOC105369496 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369496 Gene
Publications for LOC105369496 Gene
No publications were found for LOC105369496 Gene.
No data available for Mastermind for LOC105369496 Gene
Products for LOC105369496 Gene
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Sources for LOC105369496 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB