Aliases for LOC105369496 Gene

Data sources for LOC105369496 Gene:

Subcategory (RNA class) for LOC105369496 Gene

lncRNA

Aliases for LOC105369496 Gene

External Ids for LOC105369496 Gene

Previous GeneCards Identifiers for LOC105369496 Gene

  • GC11U902732

Summaries for LOC105369496 Gene

GeneCards Summary for LOC105369496 Gene

LOC105369496 (Uncharacterized LOC105369496) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105369496 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105369496 Gene

Genomics for LOC105369496 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105369496 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112733 Enhancer 0.5 dbSUPER 250.7 +0.7 662 6.3 SIN3A REST MYC MAX EHMT2 MIER2 ZNF143 ZNF766 MIER1 LOC105369496 NCAM1 HSALNG0087210 ENSG00000285769 PLET1
GH11J112747 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 0.4 -11.3 -11307 0.8 FEZF1 ZIC2 GLIS1 SP7 TRIM28 PKNOX1 EGR2 NR2F2 ZFHX2 NCAM1 HSALNG0087218 LOC105369496 ENSG00000285769 PLET1
GH11J112756 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -19.9 -19925 1.3 ATF2 HSALNG0087218 NCAM1 LOC105369496 PLET1
GH11J112750 Enhancer 0.4 Ensembl dbSUPER 0.4 -13.5 -13507 0.8 ZIC2 NCAM1 HSALNG0087218 LOC105369496 ENSG00000285769 PLET1
GH11J112695 Enhancer 0.4 Ensembl 0.3 +42.8 42758 0.5 JUND CTCF ATF2 ATF7 HSALNG0087210 LOC105369496 ENSG00000285769 NCAM1 PLET1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369496 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105369496 Gene

Latest Assembly
chr11:112,698,772-112,737,694
(GRCh38/hg38)
Size:
38,923 bases
Orientation:
Minus strand

Genomic View for LOC105369496 Gene

Genes around LOC105369496 on UCSC Golden Path with GeneCards custom track
LOC105369496 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105369496 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369496 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369496 Gene

Proteins for LOC105369496 Gene

Post-translational modifications for LOC105369496 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369496 Gene

Domains & Families for LOC105369496 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105369496 Gene

Function for LOC105369496 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369496 Gene

Localization for LOC105369496 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369496 Gene

Pathways & Interactions for LOC105369496 Gene

PathCards logo

SuperPathways for LOC105369496 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105369496 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105369496 Gene

Drugs & Compounds for LOC105369496 Gene

No Compound Related Data Available

Transcripts for LOC105369496 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105369496 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF226E_9606 lncRNA 620 1

Ensembl: ENST00000662440 (view in UCSC) ,

URS00008B81F3_9606 lncRNA 615 3

LncBook: HSALNT0181229,

LNCipedia: lnc-PLET1-5:1,

NONCODE: NONHSAT024224.2,

URS00009B279E_9606 lncRNA 1266 2

LncBook: HSALNT0181228,

NONCODE: NONHSAT160734.1,

URS00009B20CF_9606 lncRNA 737 2

LncBook: HSALNT0181230,

NONCODE: NONHSAT160735.1,

URS0001BEEBD9_9606 lncRNA 1269 1

LncBook: HSALNT0181228,

LOC105369496 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369496 Gene

No ASD Table

Relevant External Links for LOC105369496 Gene

GeneLoc Exon Structure for
LOC105369496

No data available for mRNA/cDNA for LOC105369496 Gene

Expression for LOC105369496 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369496 Gene

Orthologs for LOC105369496 Gene

Evolution for LOC105369496 Gene

ENSEMBL:
Gene Tree for LOC105369496 (if available)
TreeFam:
Gene Tree for LOC105369496 (if available)

No data available for Orthologs for LOC105369496 Gene

Paralogs for LOC105369496 Gene

No data available for Paralogs for LOC105369496 Gene

Variants for LOC105369496 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105369496 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369496 Gene

Disorders for LOC105369496 Gene

No disorders were found for LOC105369496 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369496 Gene

Publications for LOC105369496 Gene

No publications were found for LOC105369496 Gene.

No data available for Mastermind for LOC105369496 Gene

Products for LOC105369496 Gene

Sources for LOC105369496 Gene