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Aliases for LOC105369438 Gene

Subcategory (RNA class) for LOC105369438 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369438 Gene

  • Uncharacterized LOC105369438 3

External Ids for LOC105369438 Gene

Previous GeneCards Identifiers for LOC105369438 Gene

  • GC11U902530
  • GC11M094547

Summaries for LOC105369438 Gene

GeneCards Summary for LOC105369438 Gene

LOC105369438 (Uncharacterized LOC105369438) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369438 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369438 Gene

Genomics for LOC105369438 Gene

GeneHancer (GH) Regulatory Elements for LOC105369438 Gene

Promoters and enhancers for LOC105369438 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J094729 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 0.7 +3.8 3824 13.9 ZFX CBFA2T2 ZSCAN21 CTCF BACH1 MAFK TRIM24 SP7 PRDM1 ZNF644 AMOTL1 KDM4E BUD13P1 TAF1D ENSG00000255929 LOC105369438
GH11J094745 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.7 -9711 8.6 MAFK PKNOX1 NFE2L2 ZSCAN4 ZNF316 EP300 CEBPB JUN SP1 NFE2 GC11M094750 AMOTL1 ENSG00000256469 LOC105369438
GH11J094705 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +33.8 33757 2.8 ZSCAN21 ZNF547 PKNOX1 PRDM10 ZSCAN4 SCRT2 ZBTB17 ZNF335 ZNF660 FEZF1 AMOTL1 KDM4E LOC105369438 ENSG00000255929
GH11J094728 Enhancer 0.6 Ensembl dbSUPER 0.4 +11.9 11899 1.4 BACH1 CEBPB AMOTL1 KDM4E LOC105369438 ENSG00000255929
GH11J094721 Enhancer 0.5 Ensembl dbSUPER 0.4 +18.3 18299 0.6 FEZF1 LOC105369438 ENSG00000255929 AMOTL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369438 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369438 Gene

Genomic Locations for LOC105369438 Gene
chr11:94,675,544-94,740,400
(GRCh38/hg38)
Size:
64,857 bases
Orientation:
Minus strand

Genomic View for LOC105369438 Gene

Genes around LOC105369438 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369438 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369438 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369438 Gene

Proteins for LOC105369438 Gene

Post-translational modifications for LOC105369438 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369438 Gene

Domains & Families for LOC105369438 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369438 Gene

Function for LOC105369438 Gene

Phenotypes From GWAS Catalog for LOC105369438 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369438 Gene

Localization for LOC105369438 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369438 Gene

Pathways & Interactions for LOC105369438 Gene

PathCards logo

SuperPathways for LOC105369438 Gene

No Data Available

Interacting Proteins for LOC105369438 Gene

Gene Ontology (GO) - Biological Process for LOC105369438 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369438 Gene

Drugs & Compounds for LOC105369438 Gene

No Compound Related Data Available

Transcripts for LOC105369438 Gene

mRNA/cDNA for LOC105369438 Gene

(2) Additional mRNA sequences :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369438 Gene

No ASD Table

Relevant External Links for LOC105369438 Gene

GeneLoc Exon Structure for
LOC105369438

Expression for LOC105369438 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369438 Gene

Orthologs for LOC105369438 Gene

No data available for Orthologs and Evolution for LOC105369438 Gene

Paralogs for LOC105369438 Gene

No data available for Paralogs for LOC105369438 Gene

Variants for LOC105369438 Gene

Sequence variations from dbSNP and Humsavar for LOC105369438 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000000062 -- 94,706,546(-) T/G intron_variant
rs1000027234 -- 94,583,095(-) T/TT intron_variant
rs1000069409 -- 94,665,689(-) G/C/T intron_variant
rs1000089649 -- 94,690,401(-) C/A intron_variant
rs1000092901 -- 94,563,138(-) T/A genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369438 Gene

Disorders for LOC105369438 Gene

No disorders were found for LOC105369438 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369438 Gene

Publications for LOC105369438 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC105369438 Gene

Products for LOC105369438 Gene

Sources for LOC105369438 Gene

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