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Aliases for LOC105369388 Gene

Subcategory (RNA class) for LOC105369388 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369388 Gene

  • Uncharacterized LOC105369388 3
  • CTD-2562J17.4 3

External Ids for LOC105369388 Gene

Previous GeneCards Identifiers for LOC105369388 Gene

  • GC11U902509

Summaries for LOC105369388 Gene

GeneCards Summary for LOC105369388 Gene

LOC105369388 (Uncharacterized LOC105369388) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105369388 include Hepatocellular Carcinoma.

Additional gene information for LOC105369388 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369388 Gene

Genomics for LOC105369388 Gene

GeneHancer (GH) Regulatory Elements for LOC105369388 Gene

Promoters and enhancers for LOC105369388 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J075154 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +65.2 65244 12 ELF3 CEBPG RERE AHR TFE3 TRIM24 SP1 HNF1A PPARG SP5 SLCO2B1 C2CD3 P4HA3 ENSG00000255395 XRRA1 OR2AT4 LOC105369388
GH11J075214 Enhancer 1.2 Ensembl ENCODE 0.4 +11.0 10963 0.4 ZNF652 CTCF ELF3 ZNF148 CEBPG RERE AHR BACH1 TFE3 PPARG ENSG00000254429 SLCO2B1 LOC105369388 ENSG00000255136 ENSG00000255395
GH11J075202 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +20.8 20845 3.7 CC2D1A ELF3 CTCF CEBPG SP1 PPARG SP5 RAD21 KAT8 RXRA LOC105369388 ENSG00000255395 SLCO2B1
GH11J075193 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +30.6 30565 3.1 SP1 RXRA JUND YY1 GABPA STAT1 RCOR1 RAD21 HNF4A MAX SLCO2B1 NEU3 ARRB1 SPCS2 LOC105369388 ENSG00000255395
GH11J075149 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.2 +73.6 73646 4.3 NFIB SP1 PPARG RXRA RXRB ZNF24 SCRT2 SCRT1 NR2F2 NFIC SLCO2B1 ENSG00000255395 XRRA1 TPBGL LOC105369388
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369388 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369388 Gene

Genomic Locations for LOC105369388 Gene
chr11:75,205,717-75,225,564
(GRCh38/hg38)
Size:
19,848 bases
Orientation:
Minus strand

Genomic View for LOC105369388 Gene

Genes around LOC105369388 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369388 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369388 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369388 Gene

Proteins for LOC105369388 Gene

Post-translational modifications for LOC105369388 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369388 Gene

Domains & Families for LOC105369388 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369388 Gene

Function for LOC105369388 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369388 Gene

Localization for LOC105369388 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369388 Gene

Pathways & Interactions for LOC105369388 Gene

PathCards logo

SuperPathways for LOC105369388 Gene

No Data Available

Interacting Proteins for LOC105369388 Gene

Gene Ontology (GO) - Biological Process for LOC105369388 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369388 Gene

Drugs & Compounds for LOC105369388 Gene

No Compound Related Data Available

Transcripts for LOC105369388 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369388 Gene

No ASD Table

Relevant External Links for LOC105369388 Gene

GeneLoc Exon Structure for
LOC105369388

No data available for mRNA/cDNA for LOC105369388 Gene

Expression for LOC105369388 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369388 Gene

Orthologs for LOC105369388 Gene

No data available for Orthologs and Evolution for LOC105369388 Gene

Paralogs for LOC105369388 Gene

No data available for Paralogs for LOC105369388 Gene

Variants for LOC105369388 Gene

Sequence variations from dbSNP and Humsavar for LOC105369388 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000211149 -- 75,213,584(-) T/C intron_variant
rs1000341589 -- 75,224,443(-) T/C intron_variant
rs1000418929 -- 75,207,382(-) G/A non_coding_transcript_variant
rs1000621717 -- 75,213,630(-) A/C intron_variant
rs1000765831 -- 75,220,204(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369388 Gene

Disorders for LOC105369388 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105369388 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105369388: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369388 Gene

Publications for LOC105369388 Gene

No publications were found for LOC105369388 Gene.

No data available for External Links for LOC105369388 Gene

Products for LOC105369388 Gene

Sources for LOC105369388 Gene

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