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Aliases for LOC105369309 Gene

Subcategory (RNA class) for LOC105369309 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369309 Gene

  • Uncharacterized LOC105369309 3

External Ids for LOC105369309 Gene

Previous GeneCards Identifiers for LOC105369309 Gene

  • GC11U902631

Summaries for LOC105369309 Gene

GeneCards Summary for LOC105369309 Gene

LOC105369309 (Uncharacterized LOC105369309) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369309 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369309 Gene

Genomics for LOC105369309 Gene

GeneHancer (GH) Regulatory Elements for LOC105369309 Gene

Promoters and enhancers for LOC105369309 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J057230 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.2 172 2.3 PRDM1 ZNF512 ZNF24 ZSCAN5C ZBTB48 ZNF366 LOC105369309 LRRC55 PRG2 GC11P057188
GH11J057233 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.7 -4.1 -4087 5 CBFA2T2 MLLT1 KLF14 EGR1 SMARCA4 MTA1 DPF2 ATF1 REST PKNOX1 APLNR SSRP1 PRG2 LOC105369309
GH11J057224 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.4 +6.9 6926 0.9 SP1 FOS FOSL2 JUN APLNR TNKS1BP1 P2RX3 UBE2L6 LRRC55 LOC105369309 GC11P057188
GH11J057200 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +28.2 28189 6.4 SP1 RXRA NR2F2 RAD21 CTCF MAX APLNR LRRC55 UBE2L6 GC11P057188 LOC105369309
GH11J057212 Enhancer 0.8 ENCODE dbSUPER 0.4 +17.6 17585 2.4 SP1 ZNF148 CDC5L ZSCAN4 PKNOX1 SOX6 USF1 FOS MCM7 KDM1A APLNR LRRC55 LOC105369309 GC11P057188
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369309 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369309 Gene

Genomic Locations for LOC105369309 Gene
chr11:57,189,069-57,231,589
(GRCh38/hg38)
Size:
42,521 bases
Orientation:
Minus strand

Genomic View for LOC105369309 Gene

Genes around LOC105369309 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369309 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369309 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369309 Gene

Proteins for LOC105369309 Gene

Post-translational modifications for LOC105369309 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369309 Gene

Domains & Families for LOC105369309 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369309 Gene

Function for LOC105369309 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369309 Gene

Localization for LOC105369309 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369309 Gene

Pathways & Interactions for LOC105369309 Gene

PathCards logo

SuperPathways for LOC105369309 Gene

No Data Available

Interacting Proteins for LOC105369309 Gene

Gene Ontology (GO) - Biological Process for LOC105369309 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369309 Gene

Drugs & Compounds for LOC105369309 Gene

No Compound Related Data Available

Transcripts for LOC105369309 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369309 Gene

No ASD Table

Relevant External Links for LOC105369309 Gene

GeneLoc Exon Structure for
LOC105369309

No data available for mRNA/cDNA for LOC105369309 Gene

Expression for LOC105369309 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369309 Gene

Orthologs for LOC105369309 Gene

No data available for Orthologs and Evolution for LOC105369309 Gene

Paralogs for LOC105369309 Gene

No data available for Paralogs for LOC105369309 Gene

Variants for LOC105369309 Gene

Sequence variations from dbSNP and Humsavar for LOC105369309 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000005437 -- 57,174,539(-) T/C intron_variant
rs1000012289 -- 57,047,919(-) C/A/T genic_downstream_transcript_variant, intron_variant
rs1000032511 -- 57,115,356(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000035771 -- 57,192,936(-) G/A/C intron_variant
rs1000049261 -- 57,213,927(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369309 Gene

Disorders for LOC105369309 Gene

No disorders were found for LOC105369309 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369309 Gene

Publications for LOC105369309 Gene

No publications were found for LOC105369309 Gene.

No data available for External Links for LOC105369309 Gene

Products for LOC105369309 Gene

Sources for LOC105369309 Gene

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