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Aliases for LOC105369219 Gene

Subcategory (RNA class) for LOC105369219 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369219 Gene

  • Uncharacterized LOC105369219 3

External Ids for LOC105369219 Gene

Previous GeneCards Identifiers for LOC105369219 Gene

  • GC20U900984

Summaries for LOC105369219 Gene

GeneCards Summary for LOC105369219 Gene

LOC105369219 (Uncharacterized LOC105369219) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369219 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369219 Gene

Genomics for LOC105369219 Gene

GeneHancer (GH) Regulatory Elements for LOC105369219 Gene

Promoters and enhancers for LOC105369219 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J001731 Enhancer 0.6 ENCODE 0.7 -4.5 -4533 0.9 CREM ZBED1 IKZF1 IKZF2 EED HDGF NR2F1 NBN JUNB BATF SIRPG SIRPD ENSG00000242324 SIRPB1 LOC105369219 PIR35224
GH20J001722 Enhancer 0.9 Ensembl ENCODE 0.4 +5.5 5465 1.8 SP1 CREM IKZF1 IKZF2 PKNOX1 DPF2 EED RUNX3 USF1 NR2F1 ENSG00000234282 SIRPB1 LOC105369219 SIRPB3P
GH20J001708 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 +19.3 19295 0.5 CBFA2T2 CTBP1 NCOR1 TCF12 TAL1 KLF16 MTA2 TEAD4 CBFA2T3 SIRPB3P SIRPG SIRPB1 ENSG00000234282 LOC105369219
GH20J001718 Enhancer 0.6 Ensembl ENCODE 0.4 +8.3 8293 1.9 CTBP1 FOS SIRPG SIRPB1 ENSG00000234282 LOC105369219 SIRPB3P
GH20J001709 Promoter 0.5 Ensembl 0.4 +19.9 19865 0.2 SIRPB3P SIRPG LOC105369219
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369219 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369219 Gene

Genomic Locations for LOC105369219 Gene
chr20:1,692,913-1,727,566
(GRCh38/hg38)
Size:
34,654 bases
Orientation:
Minus strand

Genomic View for LOC105369219 Gene

Genes around LOC105369219 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369219 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369219 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369219 Gene

Proteins for LOC105369219 Gene

Post-translational modifications for LOC105369219 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369219 Gene

Domains & Families for LOC105369219 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369219 Gene

Function for LOC105369219 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369219 Gene

Localization for LOC105369219 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369219 Gene

Pathways & Interactions for LOC105369219 Gene

PathCards logo

SuperPathways for LOC105369219 Gene

No Data Available

Interacting Proteins for LOC105369219 Gene

Gene Ontology (GO) - Biological Process for LOC105369219 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369219 Gene

Drugs & Compounds for LOC105369219 Gene

No Compound Related Data Available

Transcripts for LOC105369219 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369219 Gene

No ASD Table

Relevant External Links for LOC105369219 Gene

GeneLoc Exon Structure for
LOC105369219

No data available for mRNA/cDNA for LOC105369219 Gene

Expression for LOC105369219 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369219 Gene

Orthologs for LOC105369219 Gene

No data available for Orthologs and Evolution for LOC105369219 Gene

Paralogs for LOC105369219 Gene

No data available for Paralogs for LOC105369219 Gene

Variants for LOC105369219 Gene

Sequence variations from dbSNP and Humsavar for LOC105369219 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000014972 -- 1,726,962(-) T/C intron_variant
rs1000052436 -- 1,726,231(-) G/A/T intron_variant
rs1000236686 -- 1,703,891(-) G/A intron_variant
rs1000390351 -- 1,699,224(-) C/T intron_variant
rs1000496807 -- 1,715,867(-) C/A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369219 Gene

Disorders for LOC105369219 Gene

No disorders were found for LOC105369219 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369219 Gene

Publications for LOC105369219 Gene

No publications were found for LOC105369219 Gene.

No data available for External Links for LOC105369219 Gene

Products for LOC105369219 Gene

Sources for LOC105369219 Gene

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